Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ACLV7Z_RS02010 Genome accession   NZ_OZ217343
Coordinates   370746..372242 (+) Length   498 a.a.
NCBI ID   WP_112443790.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 365746..377242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS01995 (SMIG22_03880) - 366838..368031 (+) 1194 WP_218774185.1 O-antigen ligase family protein -
  ACLV7Z_RS02000 - 368422..368619 (-) 198 WP_411882187.1 hypothetical protein -
  ACLV7Z_RS02005 (SMIG22_03890) amiA3 368691..370679 (+) 1989 WP_218774184.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Z_RS02010 (SMIG22_03900) amiC 370746..372242 (+) 1497 WP_112443790.1 ABC transporter permease Regulator
  ACLV7Z_RS02015 (SMIG22_03910) amiD 372242..373168 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7Z_RS02020 (SMIG22_03920) amiE 373177..374244 (+) 1068 WP_218774183.1 ABC transporter ATP-binding protein Regulator
  ACLV7Z_RS02025 (SMIG22_03930) amiF 374255..375181 (+) 927 WP_125423341.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7Z_RS02030 (SMIG22_03940) - 375596..376474 (-) 879 WP_218774182.1 LysR family transcriptional regulator -
  ACLV7Z_RS02035 (SMIG22_03950) - 376602..376952 (-) 351 WP_000208712.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55576.08 Da        Isoelectric Point: 9.3559

>NTDB_id=1170189 ACLV7Z_RS02010 WP_112443790.1 370746..372242(+) (amiC) [Streptococcus mitis isolate S. mitis G22]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTLVPRKLIFKQDPNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SMDSSVTVEANATNKAIYEKYINQLGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTAQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVASYGKDDPYTATESNYQYPSMIVSSAIAGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGA
LTFLMALPTIALVYIVRLLGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1170189 ACLV7Z_RS02010 WP_112443790.1 370746..372242(+) (amiC) [Streptococcus mitis isolate S. mitis G22]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCGATTTTCTTAGTAACGACTTTGACCTACACGATTAT
CTATACCTTGGTTCCTCGAAAATTGATTTTCAAACAGGATCCTAACTATAATAAAATTGCGACAACGGCTGATAAACGTG
ATAACTATGAAAATACTGTGTTTGAGCGTATGGGCTACATTGAGTATTATGATACTAAGGAGTTGCAAGAAAAGGCAAGT
AGCATGGATTCTTCTGTAACAGTAGAGGCAAATGCGACCAATAAAGCTATTTATGAAAAGTACATCAATCAATTAGGTCA
TGGTTGGACTTTGGGAGAATTTACTGAAAGTGGTCAATTTTATGCTACTCGTGAAATTCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGACCATACAAATAAAATTCAAGACCCTGAAAATCCAGACTTGAAACGCTACCTT
CGTTTCGAAAATGATCCAGCTATCGGATGGTCATTGGTCGGCTCAGGTACTAAACATAAATATCTCTTGTACTTCAACAG
TCAGTTCCCATTTGTGCATCAAAATTTTGTGAATATCAATTTAGGAGACTCTTATCCAACCTATGCTAATACACCAGTTC
TTCAGGTTATTACTCAAGGTCAAGGACAAACCAAAACTGCTCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTA
AATATTTACTCAAGAACCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTATGGGAAAGATGATCCTTA
TACAGCGACTGAAAGTAATTACCAATATCCATCTATGATTGTCAGCTCTGCTATTGCTGGTTTGATTGGTTTGGTGATTT
CTTATGCGATTGCCGTGCCACTTGGTTCAGCCATGGCTCGTTTCAAGAACACTTGGATCGATAGCTTCTCAACAGGGGCT
TTGACCTTCTTGATGGCACTTCCAACAATCGCCCTTGTTTATATTGTTCGATTGCTTGGTTCCTCAATTGGTTTACCAGA
TTCATTTCCTATCTTAGGGGCTGGAGATTGGCGTTCGTATGTTTTACCAGCAGTTATCCTTGGTTTGTTGGGTGCTCCGG
GTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTCGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCGTTAT
TGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTTGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTGGGAGAT
ATTTGGATGACCATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.908

100

0.769
  amiC Streptococcus thermophilus LMG 18311

76.707

100

0.767
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763

Multiple sequence alignment