Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   ACLV65_RS01260 Genome accession   NZ_OZ217342
Coordinates   233359..233772 (+) Length   137 a.a.
NCBI ID   WP_411864328.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 228359..238772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS01220 (SMIB22_02370) - 228413..229471 (+) 1059 WP_411864324.1 zinc-dependent alcohol dehydrogenase family protein -
  ACLV65_RS01225 (SMIB22_02380) - 229622..229987 (+) 366 WP_000286405.1 DUF1033 family protein -
  ACLV65_RS01230 (SMIB22_02390) comGA/cglA/cilD 230065..231006 (+) 942 WP_411864325.1 competence type IV pilus ATPase ComGA Machinery gene
  ACLV65_RS01235 (SMIB22_02400) comGB/cglB 230954..231970 (+) 1017 WP_411865197.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACLV65_RS01240 (SMIB22_02410) comGC/cglC 231972..232295 (+) 324 WP_172925580.1 competence type IV pilus major pilin ComGC Machinery gene
  ACLV65_RS01245 (SMIB22_02420) comGD/cglD 232258..232692 (+) 435 WP_411864326.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACLV65_RS01250 (SMIB22_02430) comGE/cglE 232655..232957 (+) 303 WP_411864327.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACLV65_RS01255 (SMIB22_02440) comGF/cglF 232920..233381 (+) 462 WP_173234886.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACLV65_RS01260 (SMIB22_02450) comGG/cglG 233359..233772 (+) 414 WP_411864328.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACLV65_RS01265 (SMIB22_02460) - 233805..234392 (+) 588 WP_411864329.1 class I SAM-dependent methyltransferase -
  ACLV65_RS01270 (SMIB22_02470) comYH 234453..235406 (+) 954 WP_411864330.1 class I SAM-dependent methyltransferase Machinery gene
  ACLV65_RS01275 (SMIB22_02480) - 235456..236646 (+) 1191 WP_411864331.1 acetate kinase -
  ACLV65_RS01280 (SMIB22_02490) rnpA 236796..237167 (+) 372 WP_173282963.1 ribonuclease P protein component -
  ACLV65_RS01285 (SMIB22_02500) - 237142..237966 (+) 825 WP_200893270.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15997.48 Da        Isoelectric Point: 10.3203

>NTDB_id=1170090 ACLV65_RS01260 WP_411864328.1 233359..233772(+) (comGG/cglG) [Streptococcus mitis isolate S. mitis B22]
MWKKQKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TNLVTRVRTPKRQYEFIFPSVKIKEEKKDKKEEVATDSSEKAEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1170090 ACLV65_RS01260 WP_411864328.1 233359..233772(+) (comGG/cglG) [Streptococcus mitis isolate S. mitis B22]
GTGTGGAAAAAGCAAAAAGTTAAGGCAGGAGTTCTCCTCTATGCAGTCACTATGGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGCGGGGAACAGGTCTTTAATCTGGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAACTTGGTGACAAGGGTTCGTACGCCTAAGAGACAATATGAATTCATCTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAAGGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGCGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis SK321

88.321

100

0.883

  comGG/cglG Streptococcus mitis NCTC 12261

90.984

89.051

0.81

  comGG/cglG Streptococcus pneumoniae D39

92.308

85.401

0.788

  comGG/cglG Streptococcus pneumoniae TIGR4

92.308

85.401

0.788

  comGG/cglG Streptococcus pneumoniae R6

92.308

85.401

0.788

  comGG/cglG Streptococcus pneumoniae Rx1

92.308

85.401

0.788

  comYG Streptococcus mutans UA140

38.806

97.81

0.38

  comYG Streptococcus mutans UA159

38.806

97.81

0.38


Multiple sequence alignment