Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilG   Type   Machinery gene
Locus tag   ACH8EK_RS10275 Genome accession   NZ_OZ197910
Coordinates   1955371..1956603 (+) Length   410 a.a.
NCBI ID   WP_003689811.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-24-001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1950371..1961603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH8EK_RS10260 fabI 1951262..1952047 (-) 786 WP_002223367.1 enoyl-ACP reductase FabI -
  ACH8EK_RS10265 dapD 1952202..1953023 (-) 822 WP_003689804.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  ACH8EK_RS10270 pgi 1953233..1954861 (-) 1629 WP_395372569.1 glucose-6-phosphate isomerase -
  ACH8EK_RS10275 pilG 1955371..1956603 (+) 1233 WP_003689811.1 type 4 pilus assembly protein PilG Machinery gene
  ACH8EK_RS10280 pilD 1956677..1957537 (+) 861 WP_003689814.1 A24 family peptidase Machinery gene
  ACH8EK_RS10285 coaE 1957534..1958166 (+) 633 WP_003689816.1 dephospho-CoA kinase -
  ACH8EK_RS10290 - 1958159..1958368 (+) 210 WP_003696096.1 DNA gyrase inhibitor YacG -
  ACH8EK_RS10295 pilF 1958454..1960130 (-) 1677 WP_003689817.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACH8EK_RS10305 - 1960468..1960914 (-) 447 WP_003689818.1 DUF441 domain-containing protein -

Sequence


Protein


Download         Length: 410 a.a.        Molecular weight: 45332.36 Da        Isoelectric Point: 10.0085

>NTDB_id=1169733 ACH8EK_RS10275 WP_003689811.1 1955371..1956603(+) (pilG) [Neisseria gonorrhoeae isolate SGC-24-001]
MAKNGGFSLFAKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARKKLAKRGIRPLQITRVKTSSKRKITQEDITVFTRQLS
TMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGQVEQGSSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIY
KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPPLTQTVMDMSDFFVSYGWMVLIALGFAI
YGFLKLKARSIKIQRRMDAILLRMPIFGDIVRKGTIARWGRTTATLFAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRV
IQGLSMTSGMRATELFPNMMLQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIGTLLVAMYL
PLFNLGNVVA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1169733 ACH8EK_RS10275 WP_003689811.1 1955371..1956603(+) (pilG) [Neisseria gonorrhoeae isolate SGC-24-001]
ATGGCTAAAAATGGGGGATTTTCTTTGTTCGCAAAGAAAGAAAAACGCTTTATCTTTGAAGGCAGGCATTCTGCCTCCGA
CAAACTGGTCAACGGCGAAGTATCCGCGTTTACCGAAGAAGAGGCACGCAAAAAACTGGCAAAACGCGGCATCCGCCCGT
TGCAGATTACCCGTGTGAAAACAAGCTCCAAGCGCAAAATCACACAAGAAGACATTACCGTTTTCACCCGCCAGCTTTCC
ACGATGATTAAAGCGGGCCTGCCGCTGATGCAGGCATTTGAAATCGTGGCGCGCGGACACGGCAACCCGTCTATGACGGA
AATGCTGATGGAAATCCGAGGCCAAGTGGAACAGGGCAGCTCGTTGAGCCGCGCATTCTCAAACCACCCGAAATATTTCG
ACCGCTTCTACTGCAACCTGGTTGCGGCGGGCGAAACGGGCGGTGTATTGGAAAGCCTGCTGGACAAATTGGCAATTTAC
AAGGAAAAAACCCAGGCCATCCGCAAAAAGGTAAAAACCGCGCTAACCTATCCGGTATCCGTCATCGCCGTCGCCATCGG
TTTGGTATTCGTGATGATGATTTTCGTACTGCCCGCCTTTAAAGAAGTTTACGCCAATATGGGCGCGGAGCTTCCCCCAC
TGACCCAAACAGTGATGGATATGTCCGACTTTTTCGTCTCATACGGCTGGATGGTGCTGATCGCACTGGGCTTTGCCATA
TACGGCTTCCTTAAATTGAAGGCGCGTTCGATTAAAATCCAACGGCGTATGGATGCCATACTGCTGCGTATGCCGATTTT
CGGAGACATTGTCCGCAAAGGGACGATTGCCCGCTGGGGCAGGACGACGGCAACGCTGTTTGCCGCCGGCGTGCCTTTGG
TCGATGTATTGGACTCCACTGCCGGCGCGGCGGGCAATTTAATCTATGAAGAAGCCACCCGGGAAATCCGTACGCGCGTC
ATCCAAGGTCTGTCTATGACTTCGGGGATGCGTGCGACGGAACTGTTCCCCAATATGATGTTGCAGATGTCCTCCATCGG
CGAGGAATCGGGTTCTTTGGACGATATGCTCAACAAAGCCGCCGAATTTTACGAAGACGAGGTGGACAATGCGGTCGGCA
GGCTGTCCGCTATGATGGAGCCGATTATTATTGTGATTTTGGGCTTGGTCATCGGTACGCTTCTGGTCGCTATGTATCTG
CCGCTGTTCAACTTGGGCAACGTGGTCGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

100

100

1

  pilG Neisseria meningitidis 44/76-A

98.78

100

0.988

  pilC Acinetobacter baumannii D1279779

47.236

97.073

0.459

  pilC Acinetobacter baylyi ADP1

45.363

97.317

0.441

  pilC Pseudomonas stutzeri DSM 10701

44.665

98.293

0.439

  pilC Legionella pneumophila strain ERS1305867

44.836

96.829

0.434

  pilC Vibrio cholerae strain A1552

41.294

98.049

0.405

  pilC Vibrio campbellii strain DS40M4

39.163

99.024

0.388


Multiple sequence alignment