Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACNUEH_RS05445 Genome accession   NZ_OZ197095
Coordinates   1129414..1130640 (-) Length   408 a.a.
NCBI ID   WP_416632336.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate 23S01404-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1124414..1135640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEH_RS05415 - 1124445..1125755 (+) 1311 WP_114198614.1 tetratricopeptide repeat protein -
  ACNUEH_RS05420 - 1125832..1126158 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ACNUEH_RS05425 rlmB 1126260..1127009 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUEH_RS05430 - 1127045..1127959 (+) 915 WP_000075015.1 DMT family transporter -
  ACNUEH_RS05435 coaE 1127956..1128552 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  ACNUEH_RS05440 pilD 1128554..1129414 (-) 861 WP_001152273.1 prepilin peptidase Machinery gene
  ACNUEH_RS05445 pilC 1129414..1130640 (-) 1227 WP_416632336.1 type II secretion system F family protein Machinery gene
  ACNUEH_RS05450 pilB 1130670..1132382 (-) 1713 WP_001274989.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACNUEH_RS05455 tpiA 1132673..1133467 (+) 795 WP_000016939.1 triose-phosphate isomerase -
  ACNUEH_RS05460 secG 1133480..1133809 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ACNUEH_RS05480 rimP 1134451..1134975 (+) 525 WP_000777730.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44953.46 Da        Isoelectric Point: 9.9566

>NTDB_id=1169444 ACNUEH_RS05445 WP_416632336.1 1129414..1130640(-) (pilC) [Acinetobacter baumannii isolate 23S01404-6]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
TFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1169444 ACNUEH_RS05445 WP_416632336.1 1129414..1130640(-) (pilC) [Acinetobacter baumannii isolate 23S01404-6]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAGGAGA
ACTTCCGGCTAAAAACATGGCCTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGCGAAGTCGAGGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACCATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCAGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
ACCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGTTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTAGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.265

100

0.993
  pilC Acinetobacter baylyi ADP1

86.275

100

0.863
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria meningitidis 44/76-A

47.368

97.794

0.463
  pilG Neisseria gonorrhoeae MS11

47.368

97.794

0.463
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

40.447

98.775

0.4

Multiple sequence alignment