Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACNUEH_RS05440 Genome accession   NZ_OZ197095
Coordinates   1128554..1129414 (-) Length   286 a.a.
NCBI ID   WP_001152273.1    Uniprot ID   A0A836M4G0
Organism   Acinetobacter baumannii isolate 23S01404-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1123554..1134414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEH_RS05415 - 1124445..1125755 (+) 1311 WP_114198614.1 tetratricopeptide repeat protein -
  ACNUEH_RS05420 - 1125832..1126158 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ACNUEH_RS05425 rlmB 1126260..1127009 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUEH_RS05430 - 1127045..1127959 (+) 915 WP_000075015.1 DMT family transporter -
  ACNUEH_RS05435 coaE 1127956..1128552 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  ACNUEH_RS05440 pilD 1128554..1129414 (-) 861 WP_001152273.1 prepilin peptidase Machinery gene
  ACNUEH_RS05445 pilC 1129414..1130640 (-) 1227 WP_416632336.1 type II secretion system F family protein Machinery gene
  ACNUEH_RS05450 pilB 1130670..1132382 (-) 1713 WP_001274989.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACNUEH_RS05455 tpiA 1132673..1133467 (+) 795 WP_000016939.1 triose-phosphate isomerase -
  ACNUEH_RS05460 secG 1133480..1133809 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32088.53 Da        Isoelectric Point: 7.1041

>NTDB_id=1169443 ACNUEH_RS05440 WP_001152273.1 1128554..1129414(-) (pilD) [Acinetobacter baumannii isolate 23S01404-6]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1169443 ACNUEH_RS05440 WP_001152273.1 1128554..1129414(-) (pilD) [Acinetobacter baumannii isolate 23S01404-6]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M4G0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

52.92

95.804

0.507
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441

Multiple sequence alignment