Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACFCTL_RS07490 Genome accession   NZ_OZ182546
Coordinates   1633068..1634288 (+) Length   406 a.a.
NCBI ID   WP_014841650.1    Uniprot ID   -
Organism   Legionella pneumophila isolate ZIB8567     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1628068..1639288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCTL_RS07470 - 1629215..1629784 (-) 570 WP_014841648.1 hypoxanthine-guanine phosphoribosyltransferase -
  ACFCTL_RS07475 - 1629827..1630153 (-) 327 WP_011213802.1 DUF1820 family protein -
  ACFCTL_RS07480 - 1630336..1631079 (-) 744 WP_014841649.1 methyltransferase domain-containing protein -
  ACFCTL_RS07485 pilB 1631338..1633062 (+) 1725 WP_010947251.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACFCTL_RS07490 pilC 1633068..1634288 (+) 1221 WP_014841650.1 type II secretion system F family protein Machinery gene
  ACFCTL_RS07495 pilD 1634333..1635196 (+) 864 WP_014841651.1 A24 family peptidase Machinery gene
  ACFCTL_RS07500 - 1635210..1636415 (-) 1206 WP_014841652.1 cyclic nucleotide-binding domain-containing protein -
  ACFCTL_RS07505 - 1636523..1637116 (-) 594 WP_011213808.1 hypothetical protein -
  ACFCTL_RS07510 - 1637132..1637587 (-) 456 WP_014841654.1 hypothetical protein -
  ACFCTL_RS07515 - 1637721..1638536 (+) 816 WP_014841655.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44709.79 Da        Isoelectric Point: 9.5018

>NTDB_id=1167983 ACFCTL_RS07490 WP_014841650.1 1633068..1634288(+) (pilC) [Legionella pneumophila isolate ZIB8567]
MDKNSPPLLTFHYQGINKAGQKMEGDIQARSLAIAKADLRKQGIVTNKVVKKRNPLFDRKNKKITQADITVFSRQLATMI
ESGIPLVQAFDIVAKGQSNKRLKDLIETIKHDIETGLTLAESLIKHPLYFNELFCNLVDAGEKSGSLDIMLDKVATYKEK
IEIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEFMQTYWYIIFGALGGVVYSF
FYAKNHSLEFAQTIDRVMLKFPVIGPILEKAAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATG
QQMFTAMENTHLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSILGILVGGLVVAMYLPIF
KLGSAV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1167983 ACFCTL_RS07490 WP_014841650.1 1633068..1634288(+) (pilC) [Legionella pneumophila isolate ZIB8567]
ATGGATAAAAATAGCCCACCCCTATTAACCTTTCATTATCAAGGCATTAATAAAGCCGGTCAAAAAATGGAGGGTGATAT
TCAAGCCAGAAGCTTGGCAATAGCTAAAGCTGATTTGCGTAAGCAGGGGATTGTTACCAATAAAGTAGTAAAAAAAAGAA
ACCCTTTGTTTGATAGAAAAAATAAAAAAATCACACAAGCAGATATTACTGTGTTTAGCCGCCAATTAGCGACGATGATC
GAGTCAGGAATACCATTAGTGCAAGCATTTGATATTGTTGCCAAAGGACAAAGCAATAAAAGACTTAAAGACTTAATAGA
AACAATTAAGCACGATATCGAAACGGGGCTAACGCTGGCAGAATCCTTAATTAAACATCCACTCTATTTTAATGAATTAT
TTTGTAATCTTGTCGATGCTGGTGAAAAATCAGGCTCATTAGATATCATGCTTGACAAGGTTGCAACGTATAAAGAAAAA
ATTGAAATCATAAAAAAGAAAATAAAAAAAGCTCTCACTTACCCAATTGCTGTTATGGTTGTCGCACTTTTGGTTACTGC
GGGATTATTAATCTATGTGGTTCCTCAATTTGAATCATTGTTTAAAGGATTTGGAGCTGATTTGCCAGCGATGACTAGAG
CTGTGATCACTATGTCTGAATTTATGCAGACTTATTGGTATATTATTTTTGGAGCTTTGGGTGGGGTTGTCTATAGCTTT
TTTTATGCTAAAAATCATTCTTTGGAGTTTGCGCAAACCATTGACAGAGTGATGCTAAAATTCCCTGTAATTGGTCCTAT
TTTAGAGAAAGCAGCAATTGCTAGATTCGCGAGGACATTATCCATTACTTTTGCTGCTGGATTACCCCTGGTTGAAGCAT
TGAAATCTGTAGCTGGAGCGACCGGGAATATTATTTATGCCAAGGCGACTGATAAAATCAGAGAAGAAGTTGCAACAGGA
CAGCAAATGTTTACTGCTATGGAAAATACTCATTTATTTCCAAATATGGTAATTCAAATGGTAGCAATTGGTGAGGAATC
AGGTGCCCTTGAAAAAATGTTAAGCAAAGTGGCTGATTTTTATGAGGAAGAAGTAAATAATGCTGTAGATGCCCTGAGTA
GTTTATTGGAGCCGATAATTATGTCAATATTGGGTATACTGGTTGGGGGATTGGTGGTGGCTATGTATTTACCTATTTTC
AAACTGGGTTCTGCTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

99.015

100

0.99
  pilC Acinetobacter baumannii D1279779

53.827

99.754

0.537
  pilC Pseudomonas stutzeri DSM 10701

53.96

99.507

0.537
  pilC Acinetobacter baylyi ADP1

52.593

99.754

0.525
  pilG Neisseria meningitidis 44/76-A

45.088

97.783

0.441
  pilG Neisseria gonorrhoeae MS11

44.836

97.783

0.438
  pilC Vibrio cholerae strain A1552

41.75

98.522

0.411
  pilC Vibrio campbellii strain DS40M4

38.916

100

0.389

Multiple sequence alignment