Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3214_RS04595 Genome accession   NZ_OZ061976
Coordinates   935807..937039 (+) Length   410 a.a.
NCBI ID   WP_367368187.1    Uniprot ID   -
Organism   Schleiferilactobacillus harbinensis isolate Schleiferilactobacillus harbinensis CIRM-BIA2388     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 930807..942039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3214_RS04575 - 932012..933313 (+) 1302 WP_152260406.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB3214_RS04580 - 933310..934038 (+) 729 WP_150391485.1 elongation factor P 5-aminopentanone reductase -
  AB3214_RS04585 - 934130..935086 (+) 957 WP_027827543.1 RodZ family helix-turn-helix domain-containing protein -
  AB3214_RS04590 pgsA 935109..935696 (+) 588 WP_367368186.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3214_RS04595 cinA 935807..937039 (+) 1233 WP_367368187.1 competence/damage-inducible protein A Machinery gene
  AB3214_RS04600 recA 937149..938420 (+) 1272 WP_367368188.1 recombinase RecA Machinery gene
  AB3214_RS04605 rny 938782..940365 (+) 1584 WP_027827539.1 ribonuclease Y -
  AB3214_RS04610 - 940511..941602 (+) 1092 WP_035439738.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 43257.42 Da        Isoelectric Point: 6.3033

>NTDB_id=1166452 AB3214_RS04595 WP_367368187.1 935807..937039(+) (cinA) [Schleiferilactobacillus harbinensis isolate Schleiferilactobacillus harbinensis CIRM-BIA2388]
MQAEIIAVGTEMLLGEITDTNSPYLARQLAQLGIDIYYQETVGDNPQRITALLQQASQRSDLVILIGGLGPTADDVTKRT
VAEFLHQPLVTNAQAKEKLTATAARLQHALTPNNLVQAQLPAGGEPLPNRTGLAVGSWNVMQGTIYVTLPGPPQEFKPMV
SEQLIPRLAQHTHKVLASTMLRFYGLTESVIATKLAPLIDAQTNPTIAIYYQFPDIAVRVTAQAADHAAAEQLVAPVAAQ
VKDLLGDAYYGTGEHGSLAQVVGQQLITRHLTITAAESLTAGEFQASLGTVSGISAVFPGGFVTYAPAQKTAMIGVPAAT
IKQYGVVSRETAAAMAEGARAKVGTDYALGFTGVAGPDTLEGQPAGTVFIGLAGPQGTTVQEFHLLGSRNEVRARAVAWG
FKMLQNALKN

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1166452 AB3214_RS04595 WP_367368187.1 935807..937039(+) (cinA) [Schleiferilactobacillus harbinensis isolate Schleiferilactobacillus harbinensis CIRM-BIA2388]
ATGCAAGCAGAGATCATCGCGGTCGGTACAGAAATGCTGTTGGGAGAAATCACCGATACCAACAGCCCGTATTTAGCTCG
GCAGCTGGCTCAATTGGGCATCGATATTTATTATCAGGAAACGGTGGGGGACAATCCCCAGCGAATCACGGCTTTGCTGC
AACAGGCCAGCCAGCGCAGCGACTTGGTCATTCTCATCGGCGGTTTAGGCCCGACCGCCGATGATGTGACGAAACGTACG
GTAGCGGAGTTTCTGCATCAGCCGCTGGTGACTAACGCTCAGGCCAAGGAAAAATTAACGGCCACGGCAGCCCGGCTGCA
GCATGCATTAACCCCGAACAACCTGGTTCAGGCCCAATTACCGGCCGGCGGCGAGCCGCTGCCGAACCGGACCGGGCTCG
CGGTGGGCAGTTGGAATGTCATGCAGGGGACGATTTACGTGACGCTGCCCGGCCCGCCCCAAGAGTTCAAACCGATGGTC
AGCGAGCAGCTGATCCCCCGGCTGGCCCAGCATACGCATAAGGTGTTGGCGTCGACCATGCTGCGCTTTTATGGGCTGAC
GGAATCAGTGATCGCGACTAAGCTGGCACCGCTGATCGATGCCCAGACGAATCCGACGATCGCCATTTATTACCAATTTC
CAGATATTGCCGTGCGGGTCACCGCCCAAGCGGCGGACCATGCCGCGGCGGAACAGCTGGTGGCGCCGGTGGCCGCCCAG
GTGAAGGACTTGCTGGGCGATGCCTATTACGGTACTGGCGAACACGGCTCGTTGGCCCAGGTCGTGGGGCAGCAGCTGAT
TACGCGGCATTTGACGATCACGGCGGCGGAGAGCCTGACGGCGGGCGAATTTCAGGCGTCACTGGGGACCGTTTCCGGTA
TTTCTGCCGTCTTTCCCGGCGGTTTTGTCACCTATGCCCCGGCTCAAAAAACAGCGATGATCGGCGTGCCGGCAGCCACG
ATTAAGCAGTACGGAGTGGTCAGCCGGGAAACGGCGGCGGCGATGGCTGAGGGTGCCCGGGCTAAAGTCGGTACTGATTA
CGCCCTGGGCTTCACCGGCGTGGCCGGACCCGATACCTTGGAAGGACAGCCGGCCGGCACAGTATTCATCGGTTTGGCCG
GGCCCCAGGGCACCACGGTGCAGGAGTTCCATTTGCTGGGCAGCCGTAATGAAGTCCGCGCCCGGGCCGTGGCTTGGGGA
TTCAAGATGCTGCAGAACGCCTTAAAAAATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-407)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

49.88

100

0.507
  cinA Streptococcus mitis SK321

49.4

100

0.502
  cinA Streptococcus pneumoniae Rx1

49.4

100

0.502
  cinA Streptococcus pneumoniae R6

49.4

100

0.502
  cinA Streptococcus pneumoniae TIGR4

49.4

100

0.502
  cinA Streptococcus pneumoniae D39

49.161

100

0.5
  cinA Streptococcus mutans UA159

47.33

100

0.476
  cinA Bacillus subtilis subsp. subtilis str. 168

39.024

100

0.39
  cinA Streptococcus suis isolate S10

37.592

99.268

0.373

Multiple sequence alignment