Detailed information NTG1165932

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: AB3Y92_RS16770
• Genome accession: NZ_OZ061327
• Coordinates: 3223291..3223977 (-)
• Length: 228 a.a.
• NCBI ID: WP_208856849.1
• Uniprot ID: -
• Organism: Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3218291..3228977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3Y92_RS16735	fliW	3218425..3218859 (-)	435	WP_058013563.1	flagellar assembly protein FliW	-
AB3Y92_RS16740	-	3218887..3219465 (-)	579	WP_012011425.1	DUF6470 family protein	-
AB3Y92_RS16745	flgL	3219514..3220425 (-)	912	WP_061409756.1	flagellar hook-associated protein FlgL	-
AB3Y92_RS16750	flgK	3220435..3221955 (-)	1521	WP_061409758.1	flagellar hook-associated protein FlgK	-
AB3Y92_RS16755	-	3221971..3222453 (-)	483	WP_034660146.1	flagellar protein FlgN	-
AB3Y92_RS16760	flgM	3222472..3222735 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
AB3Y92_RS16765	-	3222815..3223234 (-)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
AB3Y92_RS16770	comFC	3223291..3223977 (-)	687	WP_208856849.1	ComF family protein	Machinery gene
AB3Y92_RS16775	-	3223974..3224267 (-)	294	WP_061409760.1	late competence development ComFB family protein	-
AB3Y92_RS16780	comFA	3224334..3225713 (-)	1380	WP_342498014.1	DEAD/DEAH box helicase	Machinery gene
AB3Y92_RS16785	-	3225833..3226675 (-)	843	WP_058013557.1	DegV family protein	-
AB3Y92_RS16790	degU	3226893..3227582 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
AB3Y92_RS16795	degS	3227647..3228822 (-)	1176	WP_024719243.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26047.40 Da
• Isoelectric Point: 9.9625

>NTDB_id=1165932 AB3Y92_RS16770 WP_208856849.1 3223291..3223977(-) (comFC) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MICLICEGHFVASFTWKSLLLLNDNRLCIACKHRLEKIQRPICPACGRAQSNDQLCQDCSRWKERLDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAIFKRSFSIKEPVLIPIPLSKERLNERGFNQSVILASLIGQPIQQPLVKIH
QSKQSKKKKNERLDQKGMFQINQTDVIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=1165932 AB3Y92_RS16770 WP_208856849.1 3223291..3223977(-) (comFC) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
TTGATCTGCCTAATTTGTGAGGGGCATTTTGTCGCTTCTTTTACATGGAAATCATTACTTCTATTAAATGATAATCGTCT
ATGTATAGCATGTAAGCATCGCCTAGAAAAAATTCAACGCCCGATTTGTCCAGCCTGTGGGAGAGCGCAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCTTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTCTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCATTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCGATATTTAAGCGTTCCTTTTCAATTAAAGAACCTGTACTAATCCCGATTCCTTTAAGTAAAGAAAGACTAA
ATGAAAGAGGGTTTAATCAGTCCGTTATACTTGCTTCCTTGATTGGTCAGCCGATCCAGCAGCCTCTTGTGAAAATACAT
CAAAGCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAATCAGACAGATGTGAT
CGTTCAAAGGGATGTTATCTTAATTGACGATATTTATACAACAGGGGCCACCATTTATGATGCGGCGAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCATTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (136-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.565	100	0.5
comFC/cflB	Streptococcus mitis SK321	39.565	100	0.399
comFC/cflB	Streptococcus mitis NCTC 12261	38.696	100	0.39
comFC/cflB	Streptococcus pneumoniae TIGR4	38.261	100	0.386
comFC/cflB	Streptococcus pneumoniae Rx1	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae D39	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae R6	37.991	100	0.382