Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB3Y92_RS16790 Genome accession   NZ_OZ061327
Coordinates   3226893..3227582 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3221893..3232582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS16755 - 3221971..3222453 (-) 483 WP_034660146.1 flagellar protein FlgN -
  AB3Y92_RS16760 flgM 3222472..3222735 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB3Y92_RS16765 - 3222815..3223234 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  AB3Y92_RS16770 comFC 3223291..3223977 (-) 687 WP_208856849.1 ComF family protein Machinery gene
  AB3Y92_RS16775 - 3223974..3224267 (-) 294 WP_061409760.1 late competence development ComFB family protein -
  AB3Y92_RS16780 comFA 3224334..3225713 (-) 1380 WP_342498014.1 DEAD/DEAH box helicase Machinery gene
  AB3Y92_RS16785 - 3225833..3226675 (-) 843 WP_058013557.1 DegV family protein -
  AB3Y92_RS16790 degU 3226893..3227582 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB3Y92_RS16795 degS 3227647..3228822 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  AB3Y92_RS16800 - 3229044..3229712 (+) 669 WP_058013556.1 YigZ family protein -
  AB3Y92_RS16805 - 3229697..3230752 (+) 1056 WP_061409762.1 LCP family protein -
  AB3Y92_RS16810 - 3230788..3231855 (-) 1068 WP_058013554.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1165934 AB3Y92_RS16790 WP_008348273.1 3226893..3227582(-) (degU) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1165934 AB3Y92_RS16790 WP_008348273.1 3226893..3227582(-) (degU) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATTGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGTTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGGCGCCTAGCGACTAGCGGCGTTTCAGCACATCCGCAGCATGAAGTATATCCTGAAATTCGG
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment