Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB3Y92_RS16780 Genome accession   NZ_OZ061327
Coordinates   3224334..3225713 (-) Length   459 a.a.
NCBI ID   WP_342498014.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3219334..3230713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS16745 flgL 3219514..3220425 (-) 912 WP_061409756.1 flagellar hook-associated protein FlgL -
  AB3Y92_RS16750 flgK 3220435..3221955 (-) 1521 WP_061409758.1 flagellar hook-associated protein FlgK -
  AB3Y92_RS16755 - 3221971..3222453 (-) 483 WP_034660146.1 flagellar protein FlgN -
  AB3Y92_RS16760 flgM 3222472..3222735 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB3Y92_RS16765 - 3222815..3223234 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  AB3Y92_RS16770 comFC 3223291..3223977 (-) 687 WP_208856849.1 ComF family protein Machinery gene
  AB3Y92_RS16775 - 3223974..3224267 (-) 294 WP_061409760.1 late competence development ComFB family protein -
  AB3Y92_RS16780 comFA 3224334..3225713 (-) 1380 WP_342498014.1 DEAD/DEAH box helicase Machinery gene
  AB3Y92_RS16785 - 3225833..3226675 (-) 843 WP_058013557.1 DegV family protein -
  AB3Y92_RS16790 degU 3226893..3227582 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB3Y92_RS16795 degS 3227647..3228822 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  AB3Y92_RS16800 - 3229044..3229712 (+) 669 WP_058013556.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52529.42 Da        Isoelectric Point: 10.1184

>NTDB_id=1165933 AB3Y92_RS16780 WP_342498014.1 3224334..3225713(-) (comFA) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MNMDKAMELGQHLQSRHLLTAETRCSQSDLDWLEEKGLVMRTPAIERKANGLICCRCGVSKNRYFAHSPCDKCQKDCVYC
RSCIMMGKTKECGFLYEWTGPQMEETCHTELTWQGNLSKGQKRASEKLIKAIKSKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGLNIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMIKDVFRGQLEAIKIPLRFHQQPLPVPSFHWVGNWKKKLKKNQLPSKVMNWMQN
HITKKRRTLFFVPSISTMKKVTKVLRKHHLNVEGVSAEDPDRKQKVQQFRDDKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFYFGLTRNMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1165933 AB3Y92_RS16780 WP_342498014.1 3224334..3225713(-) (comFA) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
TTGAACATGGACAAAGCAATGGAACTAGGGCAGCACTTGCAGTCACGCCACCTGCTTACTGCTGAAACAAGATGCTCACA
GTCTGATTTGGATTGGTTGGAGGAGAAAGGGTTAGTTATGCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTAATTT
GCTGCAGATGTGGTGTATCAAAAAATCGGTACTTTGCCCACTCTCCGTGTGACAAGTGTCAAAAAGATTGTGTGTATTGT
AGATCATGCATCATGATGGGGAAAACAAAGGAATGTGGCTTTCTTTATGAATGGACGGGTCCGCAAATGGAAGAAACATG
TCACACGGAATTAACATGGCAGGGAAACCTGTCTAAAGGACAAAAAAGAGCATCAGAAAAATTGATCAAAGCGATAAAAA
GCAAATCTGATTTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACTGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAGAAAGCATT
TCAAGGACTGAACATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGCTAGTCATCGCTACAACTC
ACCAGTTGATGAGATATAAACATGCATTTGATGTGCTCATTATTGATGAAGTGGACGCCTTTCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GATAAAAGATGTATTTCGTGGACAACTAGAAGCCATTAAAATTCCTCTGCGCTTTCACCAACAACCTTTACCCGTCCCAT
CCTTTCATTGGGTTGGAAATTGGAAGAAGAAATTAAAGAAGAATCAGCTCCCATCTAAAGTAATGAATTGGATGCAGAAT
CATATTACAAAAAAGAGAAGGACTTTATTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACAAAGGTTCTTAGAAA
GCACCACTTAAATGTAGAAGGGGTGTCTGCTGAAGATCCAGACAGGAAACAAAAGGTCCAGCAATTCAGAGATGATAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGCGTAACGATTCCAAATGTACAAGTGGGGGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCTGATTTTTTTAAAGGAGATGT
TTTCTTTTTTTATTTTGGTTTAACGAGAAATATGAAACAAGCAAAAAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCTGAAAAATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(322-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.187

99.129

0.527

Multiple sequence alignment