Detailed information NTG1165935

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: AB3Y92_RS16795
• Genome accession: NZ_OZ061327
• Coordinates: 3227647..3228822 (-)
• Length: 391 a.a.
• NCBI ID: WP_024719243.1
• Uniprot ID: A0A081LEM4
• Organism: Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3222647..3233822

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3Y92_RS16765	-	3222815..3223234 (-)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
AB3Y92_RS16770	comFC	3223291..3223977 (-)	687	WP_208856849.1	ComF family protein	Machinery gene
AB3Y92_RS16775	-	3223974..3224267 (-)	294	WP_061409760.1	late competence development ComFB family protein	-
AB3Y92_RS16780	comFA	3224334..3225713 (-)	1380	WP_342498014.1	DEAD/DEAH box helicase	Machinery gene
AB3Y92_RS16785	-	3225833..3226675 (-)	843	WP_058013557.1	DegV family protein	-
AB3Y92_RS16790	degU	3226893..3227582 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
AB3Y92_RS16795	degS	3227647..3228822 (-)	1176	WP_024719243.1	sensor histidine kinase	Regulator
AB3Y92_RS16800	-	3229044..3229712 (+)	669	WP_058013556.1	YigZ family protein	-
AB3Y92_RS16805	-	3229697..3230752 (+)	1056	WP_061409762.1	LCP family protein	-
AB3Y92_RS16810	-	3230788..3231855 (-)	1068	WP_058013554.1	glycosyltransferase family 4 protein	-
AB3Y92_RS16815	-	3231987..3233177 (-)	1191	WP_058013890.1	teichuronic acid biosynthesis protein TuaH	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45550.27 Da
• Isoelectric Point: 5.8757

>NTDB_id=1165935 AB3Y92_RS16795 WP_024719243.1 3227647..3228822(-) (degS) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTENERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=1165935 AB3Y92_RS16795 WP_024719243.1 3227647..3228822(-) (degS) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTTGTAGAAGAGCTGAAGCAAATCAAACAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTCCATACGAGACATGCTAGAAATCGTTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTCACCATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTGCAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGCCAGATCACAGTGGTTCTCAACTATCTCAACCAGGACTTACGCCAAGTTGGCGTGTTACTT
GAAGATGCTCAAGCAAAACAAGATTTTGGACTTAGAATTATTGAAGCCCAAGAAGAAGAACGTAAAAGGGTATCCCGTGA
AATTCATGACGGTCCCGCCCAGATGCTGGCAAACGTGATGATGCGTTCTGAATTAATTGAACGGATTTTCAGAGATCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATCACGTTCCAATGCCTAGGGGATACAGAAAATGAAAGAATTGCTTCTCAATTCGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCATTGAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACGAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTTGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A0A081LEM4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841