Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   AB3235_RS04250 Genome accession   NZ_OZ061221
Coordinates   876368..876646 (+) Length   92 a.a.
NCBI ID   WP_367377718.1    Uniprot ID   -
Organism   Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 871368..881646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3235_RS04225 dat 871881..872750 (+) 870 WP_367377717.1 D-amino-acid transaminase -
  AB3235_RS04230 - 872840..873622 (+) 783 WP_010781411.1 phosphotransferase family protein -
  AB3235_RS04235 trmB 873705..874355 (+) 651 WP_316407291.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AB3235_RS04240 comGA 874448..875398 (+) 951 WP_367378546.1 competence type IV pilus ATPase ComGA -
  AB3235_RS04245 comGB 875358..876371 (+) 1014 WP_114525335.1 competence type IV pilus assembly protein ComGB -
  AB3235_RS04250 comYC 876368..876646 (+) 279 WP_367377718.1 competence type IV pilus major pilin ComGC Machinery gene
  AB3235_RS04255 comGD 876618..877082 (+) 465 WP_367377719.1 competence type IV pilus minor pilin ComGD -
  AB3235_RS04260 comGE 877060..877341 (+) 282 WP_367377720.1 competence type IV pilus minor pilin ComGE -
  AB3235_RS04265 comGF 877328..877741 (+) 414 WP_010781404.1 competence type IV pilus minor pilin ComGF -
  AB3235_RS04270 comGG 877704..878054 (+) 351 WP_367377721.1 competence type IV pilus minor pilin ComGG -
  AB3235_RS04275 - 878221..879228 (+) 1008 WP_086305608.1 class I SAM-dependent methyltransferase -
  AB3235_RS04280 - 879276..880472 (+) 1197 WP_367377722.1 acetate kinase -
  AB3235_RS04285 - 880830..881357 (-) 528 WP_314580637.1 CDP-alcohol phosphatidyltransferase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10620.52 Da        Isoelectric Point: 9.6761

>NTDB_id=1165524 AB3235_RS04250 WP_367377718.1 876368..876646(+) (comYC) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
MKKKVSGFTLLEMLVVLFVISLLLLLFVPKLINQKESASKKSDAAIAKVVETQIQVYELDFGKTPTREELINQEYVKKEQ
YDAYERAQKQPK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1165524 AB3235_RS04250 WP_367377718.1 876368..876646(+) (comYC) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
ATGAAAAAGAAAGTATCTGGGTTCACCTTATTAGAGATGTTGGTCGTACTTTTTGTAATCAGCCTGCTTTTATTATTATT
CGTGCCTAAACTAATTAATCAAAAAGAAAGCGCTAGTAAAAAAAGCGATGCAGCAATAGCAAAAGTAGTAGAAACACAAA
TTCAAGTGTATGAATTAGATTTTGGAAAGACACCCACAAGAGAAGAGTTAATCAATCAAGAATACGTCAAAAAGGAGCAG
TATGACGCGTATGAAAGAGCACAAAAACAACCGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus suis isolate S10

52.326

93.478

0.489
  comGC Lactococcus lactis subsp. cremoris KW2

45.652

100

0.457
  comGC/cglC Streptococcus mitis NCTC 12261

49.398

90.217

0.446
  comGC/cglC Streptococcus mitis SK321

49.398

90.217

0.446
  comYC Streptococcus gordonii str. Challis substr. CH1

47.059

92.391

0.435
  comGC/cglC Streptococcus pneumoniae TIGR4

46.988

90.217

0.424
  comGC/cglC Streptococcus pneumoniae Rx1

46.988

90.217

0.424
  comGC/cglC Streptococcus pneumoniae D39

46.988

90.217

0.424
  comGC/cglC Streptococcus pneumoniae R6

46.988

90.217

0.424
  comYC Streptococcus mutans UA140

44.444

88.043

0.391
  comYC Streptococcus mutans UA159

44.444

88.043

0.391

Multiple sequence alignment