Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3235_RS00855 Genome accession   NZ_OZ061221
Coordinates   170357..171604 (+) Length   415 a.a.
NCBI ID   WP_301516366.1    Uniprot ID   -
Organism   Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 165357..176604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3235_RS00835 - 166607..167899 (+) 1293 WP_367377432.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB3235_RS00840 - 167901..168626 (+) 726 WP_086305905.1 elongation factor P 5-aminopentanone reductase -
  AB3235_RS00845 - 168778..169644 (+) 867 WP_010782101.1 RodZ domain-containing protein -
  AB3235_RS00850 pgsA 169679..170260 (+) 582 WP_010782100.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3235_RS00855 cinA 170357..171604 (+) 1248 WP_301516366.1 competence/damage-inducible protein A Machinery gene
  AB3235_RS00860 recA 171867..172913 (+) 1047 WP_010782098.1 recombinase RecA Machinery gene
  AB3235_RS00865 rny 173170..174726 (+) 1557 WP_010782097.1 ribonuclease Y -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45141.50 Da        Isoelectric Point: 4.6109

>NTDB_id=1165514 AB3235_RS00855 WP_301516366.1 170357..171604(+) (cinA) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
MRAEIIAVGTELLLGQVVNTNATFLSEKLADMGVEVYFHTVVGDNPTRLEELLQLADTRSELILLCGGLGPTDDDLTKNV
LADHVGVPLVQNQAGLDALNAFFAQRQGTMTPNNLRQIETLQDGIPLPNRTGLAIGCLYKGEKNNYILLPGPPSELKPMF
LEKARPLLEKEFPTTEKLTSRVLRFFGIGESKLVTELAEMIEHQSNPTIAPYAKPNEVTLRITAKTEDERSANALLDQAE
AEVMAKVGAFFYGYGEENSLVEVVVDLLKAQKLSITAAESLTAGEFQATLGTIPGVSEVFPGGFVTYSEKTKASFLGIDP
ALLERVGVVSEACAREMAEAARRLADTDFALSFTGVAGPDELEGQPKGTVYIALAQRNGDTLVSENHFARDRDYVRHSSV
MKGLDMLRRAILNKN

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=1165514 AB3235_RS00855 WP_301516366.1 170357..171604(+) (cinA) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
ATGAGAGCAGAGATCATTGCGGTAGGAACAGAGCTTTTGTTAGGACAAGTCGTAAATACGAATGCGACGTTCTTGTCAGA
AAAATTAGCGGATATGGGGGTGGAAGTCTATTTTCATACAGTCGTTGGAGACAATCCAACACGTTTAGAAGAATTGCTTC
AATTAGCAGACACTCGCAGCGAGCTGATTCTTTTGTGCGGCGGCTTAGGACCGACCGATGATGACTTGACCAAGAATGTC
TTAGCCGATCATGTTGGGGTACCGTTGGTTCAAAATCAAGCAGGATTAGATGCTTTGAATGCTTTCTTTGCGCAACGTCA
AGGGACAATGACGCCTAACAACCTGCGTCAGATCGAGACATTGCAGGATGGGATTCCGTTGCCGAATCGTACAGGGTTGG
CGATTGGCTGTCTGTACAAAGGTGAAAAGAACAATTACATTTTATTGCCTGGACCACCGAGTGAATTGAAGCCGATGTTC
TTGGAGAAAGCGCGCCCATTACTGGAAAAGGAATTTCCAACGACGGAAAAGCTGACCTCGCGAGTGCTGCGGTTCTTTGG
GATCGGGGAATCAAAATTGGTGACGGAATTAGCAGAAATGATCGAACACCAGTCGAATCCAACGATCGCCCCTTATGCGA
AACCCAATGAGGTCACCTTGAGAATCACTGCAAAGACCGAGGATGAGCGCTCAGCCAATGCGTTATTGGACCAAGCAGAA
GCAGAAGTCATGGCTAAGGTCGGCGCCTTCTTCTACGGATACGGGGAAGAAAATAGTTTGGTCGAAGTCGTTGTGGATCT
GCTTAAGGCGCAGAAGTTAAGTATTACGGCGGCGGAAAGTCTGACTGCGGGAGAATTCCAAGCGACTCTGGGGACGATTC
CAGGCGTTTCTGAGGTATTTCCGGGAGGCTTTGTGACCTATTCTGAAAAAACAAAAGCCAGCTTCTTAGGCATTGATCCA
GCGTTATTAGAACGTGTAGGGGTCGTTAGCGAAGCGTGCGCCAGAGAGATGGCGGAAGCCGCACGGCGCTTAGCAGACAC
AGATTTTGCCTTGTCCTTTACAGGTGTTGCGGGTCCAGATGAATTAGAAGGACAACCTAAAGGAACCGTCTATATCGCAT
TGGCACAAAGAAATGGCGACACGCTTGTTAGTGAAAATCACTTTGCTCGAGATCGAGACTATGTCCGCCACAGTTCCGTG
ATGAAGGGCTTAGACATGTTGCGACGAGCAATTCTAAACAAAAATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae Rx1

52.732

100

0.535
  cinA Streptococcus pneumoniae R6

52.732

100

0.535
  cinA Streptococcus pneumoniae D39

52.732

100

0.535
  cinA Streptococcus pneumoniae TIGR4

52.732

100

0.535
  cinA Streptococcus mitis SK321

52.494

100

0.533
  cinA Streptococcus mitis NCTC 12261

52.494

100

0.533
  cinA Streptococcus mutans UA159

50.962

100

0.511
  cinA Bacillus subtilis subsp. subtilis str. 168

46.005

99.518

0.458
  cinA Streptococcus suis isolate S10

41.546

99.759

0.414

Multiple sequence alignment