Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLMBQ_RS09535 Genome accession   NZ_OY829390
Coordinates   2075111..2076334 (+) Length   407 a.a.
NCBI ID   WP_322003700.1    Uniprot ID   -
Organism   MAG: Marinobacter alexandrii isolate 78648b50-2abc-418f-b92f-8dc6f39ea282     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2070111..2081334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLMBQ_RS09515 (U5725_RS09520) - 2070341..2070784 (-) 444 WP_322003696.1 pilin -
  ACLMBQ_RS09520 (U5725_RS09525) - 2070858..2072396 (-) 1539 WP_322003697.1 O-antigen ligase family protein -
  ACLMBQ_RS09525 (U5725_RS09530) - 2072546..2073001 (-) 456 WP_322003698.1 pilin -
  ACLMBQ_RS09530 (U5725_RS09535) pilB 2073396..2075108 (+) 1713 WP_138439338.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLMBQ_RS09535 (U5725_RS09540) pilC 2075111..2076334 (+) 1224 WP_322003700.1 type II secretion system F family protein Machinery gene
  ACLMBQ_RS09540 (U5725_RS09545) pilD 2076402..2077277 (+) 876 WP_322003701.1 A24 family peptidase Machinery gene
  ACLMBQ_RS09545 (U5725_RS09550) coaE 2077281..2077880 (+) 600 WP_322003702.1 dephospho-CoA kinase -
  ACLMBQ_RS09550 (U5725_RS09555) - 2077873..2078967 (+) 1095 WP_322003703.1 hypothetical protein -
  ACLMBQ_RS09555 (U5725_RS09560) tsaA 2078970..2079713 (+) 744 WP_138439333.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44612.40 Da        Isoelectric Point: 8.6263

>NTDB_id=1162079 ACLMBQ_RS09535 WP_322003700.1 2075111..2076334(+) (pilC) [MAG: Marinobacter alexandrii isolate 78648b50-2abc-418f-b92f-8dc6f39ea282]
MAEKAQKLESYVWEGKDRKGNKSKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGGSKRITPFDIAMLTRQLATMM
KAGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTSFASALRKHPKHFDDLYCNLVDSGEKAGALEQMLERIATYLEK
TELLKKKVKKAMTYPIAVVVVAIIVTAILLVKVVPQFESLFQGFGAELPVFTQFVVELSEWMQSWWFVVLLGIVGTIYLF
KEAIRRSQKFSDFVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIDRIKNDVSSG
TQLQASMRQQDIFPVMAVQLTAIGEESGNLDEMLAKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIF
QMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1162079 ACLMBQ_RS09535 WP_322003700.1 2075111..2076334(+) (pilC) [MAG: Marinobacter alexandrii isolate 78648b50-2abc-418f-b92f-8dc6f39ea282]
ATGGCAGAGAAAGCGCAAAAACTGGAATCGTACGTCTGGGAAGGCAAGGATAGGAAAGGAAACAAATCCAAGGGCGAGCT
CACTGGATCGAACCTGGCACTGGTCAAAGCGCAGCTTCGCAAGCAGGGAATTATTCCGGACAAGGTCAAGAAGAAACCTA
AGCCATTGTTTGGCGGGGGCAGCAAAAGGATCACGCCTTTTGACATCGCGATGCTGACCCGACAGCTTGCGACCATGATG
AAAGCTGGCGTGCCTCTGGTGCAGAGCTTCGACATTGTTGCTGATGGCCTTGAGAACAAGGGCCTGCAGGAACTGGTTAT
GAGCATTCGCAACGATATCTCGTCAGGCACCAGTTTTGCCAGCGCACTGAGAAAACATCCCAAGCACTTTGACGACCTCT
ATTGTAATCTCGTTGACTCGGGTGAGAAGGCGGGTGCTCTTGAGCAGATGCTCGAACGCATTGCGACGTATCTTGAAAAA
ACCGAGCTTCTTAAAAAGAAAGTAAAAAAAGCAATGACTTACCCTATTGCTGTCGTCGTAGTCGCAATTATCGTAACCGC
CATTCTTCTGGTAAAAGTTGTCCCTCAATTCGAAAGCCTGTTCCAAGGTTTTGGGGCTGAGCTGCCAGTATTTACTCAGT
TTGTAGTCGAGCTCTCGGAATGGATGCAAAGCTGGTGGTTTGTAGTTTTGCTTGGAATCGTTGGCACTATTTATCTATTC
AAAGAAGCTATAAGACGGTCCCAAAAATTTTCTGACTTCGTTGACAAGTATGTTTTAAAGCTTCCCGTAGTCGGCGAAAT
CCTTGACAAGTCTGCCGTTGCCAAATTTGGCAGGGTTCTATCCACAACCTTCGCGGCCGGCGTCCCGTTAGTTGATGCGC
TAGACTCAGTAGCCGGAGCTACAGGCAACGCCGTGTATCGGGATGCCATTGATCGCATTAAAAACGATGTATCCAGCGGC
ACCCAGCTCCAGGCTTCCATGCGTCAACAAGACATTTTCCCTGTGATGGCCGTCCAGCTCACCGCCATAGGTGAGGAATC
CGGCAACCTGGACGAAATGTTGGCCAAAGTAGCTGAACATTACGAAGCCGTAGTCGATGACATGGTAGACAACCTCACTG
CGCTGATGGAACCTATGATCATGGCCGTGCTTGGCGTGTTGGTTGGCGGCCTCATCATCGCCATGTATCTCCCCATCTTC
CAGATGGGCCAGGTCGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)

Type II secretion system (T2SS), protein F (T2SSF)

(278-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

67.488

99.754

0.673
  pilC Acinetobacter baumannii D1279779

58.025

99.509

0.577
  pilC Acinetobacter baylyi ADP1

57.389

99.754

0.572
  pilC Legionella pneumophila strain ERS1305867

52.463

99.754

0.523
  pilG Neisseria gonorrhoeae MS11

42.611

99.754

0.425
  pilG Neisseria meningitidis 44/76-A

42.26

100

0.423
  pilC Vibrio cholerae strain A1552

40.887

99.754

0.408
  pilC Vibrio campbellii strain DS40M4

40.541

100

0.405

Multiple sequence alignment