Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   U9J37_RS11675 Genome accession   NZ_OY808997
Coordinates   2550656..2551777 (+) Length   373 a.a.
NCBI ID   WP_005472488.1    Uniprot ID   -
Organism   Vibrio sp. 16 isolate VDT1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2545656..2556777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS11655 (VDT1_2376) rsmB 2546629..2547909 (-) 1281 WP_005472536.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  U9J37_RS11660 (VDT1_2377) fmt 2547981..2548928 (-) 948 WP_005472603.1 methionyl-tRNA formyltransferase -
  U9J37_RS11665 (VDT1_2378) def 2548954..2549472 (-) 519 WP_005472495.1 peptide deformylase -
  U9J37_RS11670 (VDT1_2379) - 2549637..2550656 (+) 1020 WP_043886981.1 LysM peptidoglycan-binding domain-containing protein -
  U9J37_RS11675 (VDT1_2380) dprA 2550656..2551777 (+) 1122 WP_005472488.1 DNA-processing protein DprA Machinery gene
  U9J37_RS11680 (VDT1_2381) - 2551774..2552253 (+) 480 WP_005472594.1 DUF494 family protein -
  U9J37_RS11685 (VDT1_2382) - 2552266..2552856 (+) 591 WP_005472528.1 type I DNA topoisomerase -
  U9J37_RS11690 (VDT1_2383) - 2552902..2554035 (-) 1134 WP_005472459.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  U9J37_RS11695 (VDT1_2384) purE 2554040..2554525 (-) 486 WP_004410971.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  U9J37_RS11700 (VDT1_2385) - 2554718..2555275 (+) 558 WP_038141280.1 L-threonylcarbamoyladenylate synthase -
  U9J37_RS11705 (VDT1_2386) hemF 2555294..2556211 (+) 918 WP_005472448.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40177.98 Da        Isoelectric Point: 6.4955

>NTDB_id=1161989 U9J37_RS11675 WP_005472488.1 2550656..2551777(+) (dprA) [Vibrio sp. 16 isolate VDT1]
MNREALAAWLALYFTPRVGPKTFAKLTAIESPESIAQLSVSELQSVGFSTQQIEYLKHRAEKDIVDCFNWLDACSQRAIL
TLRDSAYPPLLKQTGTAPAILFVEGDVSCLSHPQLAMVGSRNASIDGLNCARRFAQSLVEHGLVITSGLALGVDGYAHDG
ALQGGGKTVAVLGSGLDSVYPARHRQLAERICQSGALISEFHPLAKPKADHFPRRNRIISGLSAGVLVIEAAEKSGSLIT
ARYAAEQGRDVFAIPSSIHHTQGRGCNLLIKQGACLVQNVEDIVAEIETLVRWSDQGIGAVQQEIFPLEDSKEELPFPQL
LANVGSRATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRGEL

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=1161989 U9J37_RS11675 WP_005472488.1 2550656..2551777(+) (dprA) [Vibrio sp. 16 isolate VDT1]
ATGAATCGAGAAGCTTTAGCAGCTTGGCTAGCTCTCTATTTTACCCCGCGCGTTGGCCCCAAAACATTTGCTAAGCTAAC
AGCAATCGAGAGCCCTGAAAGTATTGCTCAATTAAGCGTTTCAGAGCTTCAATCGGTAGGTTTTAGCACGCAGCAAATTG
AGTACTTAAAGCATCGCGCTGAGAAAGACATTGTCGATTGCTTCAATTGGCTAGATGCTTGCTCGCAGCGGGCGATATTG
ACGTTGCGAGACTCAGCCTACCCTCCACTATTGAAACAAACAGGCACCGCTCCAGCAATACTATTTGTTGAAGGTGATGT
TTCTTGTTTATCTCACCCTCAACTGGCCATGGTTGGCAGTCGCAATGCCAGTATCGATGGCTTGAACTGTGCCCGCCGTT
TTGCTCAATCACTTGTTGAACATGGACTGGTAATTACCAGTGGTCTGGCTTTGGGAGTTGATGGCTATGCGCATGATGGT
GCCTTGCAGGGGGGAGGGAAAACAGTAGCGGTACTGGGGAGTGGGTTGGACTCAGTATATCCTGCTCGCCATCGTCAGTT
GGCTGAAAGAATATGCCAAAGTGGAGCATTGATTTCCGAATTTCACCCACTGGCAAAACCGAAGGCGGATCATTTTCCTC
GCAGAAATAGAATTATTAGTGGCTTATCGGCAGGAGTGCTGGTGATTGAAGCAGCAGAAAAAAGCGGTTCTTTGATTACC
GCGCGTTATGCCGCGGAGCAAGGTAGAGACGTGTTTGCGATTCCAAGCTCTATTCACCACACTCAAGGTCGTGGCTGTAA
CCTATTGATAAAGCAAGGTGCTTGCTTGGTTCAGAATGTCGAAGATATTGTCGCTGAAATCGAGACACTGGTTCGCTGGT
CTGATCAAGGTATCGGTGCAGTTCAGCAGGAAATTTTTCCTCTAGAAGATAGCAAAGAAGAATTGCCATTTCCTCAGCTG
TTAGCTAACGTAGGAAGTAGGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTTCAAGAAGTCATGAT
GCAGCTCTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCGAGCTAT
GA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.125

98.391

0.611
  dprA Vibrio cholerae strain A1552

57.682

99.464

0.574
  dprA Glaesserella parasuis strain SC1401

45.479

100

0.458
  dprA Legionella pneumophila strain ERS1305867

45.33

97.587

0.442
  dprA Neisseria meningitidis strain C311

35.323

100

0.381
  dprA Neisseria meningitidis MC58

35.323

100

0.381
  dprA Neisseria gonorrhoeae strain FA1090

34.761

100

0.37
  dprA Neisseria gonorrhoeae MS11

34.257

100

0.365

Multiple sequence alignment