Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QOS47_RS00050 Genome accession   NZ_OX460909
Coordinates   6361..7461 (-) Length   366 a.a.
NCBI ID   WP_283596704.1    Uniprot ID   -
Organism   Photobacterium phosphoreum strain MIP2473 isolate MIP2473     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1361..12461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS47_RS00020 hemF 1979..2899 (-) 921 WP_283596697.1 oxygen-dependent coproporphyrinogen oxidase -
  QOS47_RS00025 tsaC 2903..3460 (-) 558 WP_283596700.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  QOS47_RS00030 purE 3655..4143 (+) 489 WP_045029700.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QOS47_RS00035 - 4143..5261 (+) 1119 WP_232573274.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QOS47_RS00040 - 5322..5882 (-) 561 WP_232612185.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  QOS47_RS00045 - 5885..6358 (-) 474 WP_045029705.1 DUF494 family protein -
  QOS47_RS00050 dprA 6361..7461 (-) 1101 WP_283596704.1 DNA-processing protein DprA Machinery gene
  QOS47_RS00055 - 7467..8537 (-) 1071 WP_045029709.1 LysM peptidoglycan-binding domain-containing protein -
  QOS47_RS00060 def 8886..9386 (+) 501 WP_045029710.1 peptide deformylase -
  QOS47_RS00065 fmt 9411..10355 (+) 945 WP_045029712.1 methionyl-tRNA formyltransferase -
  QOS47_RS00070 rsmB 10441..11721 (+) 1281 WP_107295090.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39139.74 Da        Isoelectric Point: 7.5110

>NTDB_id=1158761 QOS47_RS00050 WP_283596704.1 6361..7461(-) (dprA) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
MTETELIAWLQLAAVPSLGGSRIQRLLADSTPQQLAAMTVEQLQQRGLTAKQIQAFLQPNQSRIQQALQWQHAPQQHILT
LTSPHYPHLLKQIASPPPILFVRGDVACLGAPQIAVIGSRSASIDGRESAFHFSKALAANHYVVTSGLALGVDGQAHQGA
LQAGGLTIAVLGSGLDQVYPARHRSLAASIAEQGALVSEFWPQEQPRPQNFPRRNRVISGLSAGVLVIEAAQKSGSLITA
RYALEQGREVFALPGSIHNPASRGCNALIKSGAKLVESPADIYEEVGSLTECAINNQIGVPLATKENEELPFPALLANVG
TEATPVDVVAERCKQPIHQILPQLLELELSGWVTAVPGGYIRTRRG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1158761 QOS47_RS00050 WP_283596704.1 6361..7461(-) (dprA) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
ATGACAGAAACAGAGCTTATTGCATGGTTACAACTTGCGGCTGTTCCCTCTCTCGGTGGCAGCCGTATTCAACGCTTGTT
AGCTGATTCGACCCCACAACAATTAGCGGCAATGACGGTTGAACAATTACAGCAACGTGGTTTAACGGCAAAACAAATAC
AGGCTTTTTTACAGCCTAATCAATCACGGATCCAACAGGCATTACAATGGCAACACGCTCCGCAACAACATATTTTGACC
CTCACGTCACCCCATTACCCTCATCTATTGAAACAGATCGCTTCACCGCCACCGATATTATTTGTACGTGGTGATGTTGC
CTGTTTAGGTGCGCCCCAAATCGCGGTTATTGGCAGTCGTTCGGCATCTATTGATGGGCGTGAATCCGCGTTTCATTTTT
CAAAAGCTTTGGCGGCTAATCATTATGTGGTCACCAGTGGCTTAGCATTAGGAGTTGATGGTCAGGCACATCAAGGGGCG
TTGCAAGCCGGTGGATTAACGATTGCGGTATTAGGTTCTGGGCTTGATCAGGTTTATCCCGCACGGCATCGTTCATTGGC
CGCTAGTATTGCAGAGCAAGGCGCGTTAGTGTCAGAGTTTTGGCCGCAAGAGCAGCCTCGTCCGCAAAATTTTCCGCGTC
GCAATCGGGTTATCAGTGGCTTATCTGCTGGTGTATTAGTGATTGAGGCCGCGCAAAAAAGTGGTTCACTGATCACGGCG
CGTTATGCTCTAGAGCAAGGACGAGAGGTTTTTGCGTTGCCAGGATCAATACATAATCCGGCCAGTCGTGGCTGTAATGC
GCTGATTAAATCAGGTGCTAAACTGGTAGAAAGTCCTGCTGATATTTATGAAGAGGTAGGAAGTCTGACAGAATGTGCAA
TAAACAATCAAATAGGCGTGCCTTTAGCAACGAAGGAAAATGAAGAATTGCCATTTCCCGCTCTGTTGGCTAACGTAGGC
ACCGAAGCAACACCCGTAGATGTCGTTGCTGAACGCTGTAAACAACCCATCCACCAAATTTTACCGCAATTATTAGAATT
AGAACTGTCTGGTTGGGTGACTGCAGTGCCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(313-359)

DNA recombination-mediator protein A (DNA_processg_A)

(75-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

56.831

100

0.568
  dprA Vibrio cholerae strain A1552

52.561

100

0.533
  dprA Glaesserella parasuis strain SC1401

56.69

77.596

0.44
  dprA Neisseria meningitidis MC58

39.95

100

0.434
  dprA Neisseria meningitidis strain C311

39.95

100

0.434
  dprA Haemophilus influenzae Rd KW20

47.006

91.257

0.429
  dprA Legionella pneumophila strain ERS1305867

46.828

90.437

0.423
  dprA Neisseria gonorrhoeae MS11

39.141

100

0.423
  dprA Neisseria gonorrhoeae strain FA1090

38.636

100

0.418

Multiple sequence alignment