Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QMX76_RS17685 Genome accession   NZ_OX411212
Coordinates   3683433..3684542 (-) Length   369 a.a.
NCBI ID   WP_282250127.1    Uniprot ID   -
Organism   Vibrio campbellii isolate BF5_0283     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3678433..3689542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS17655 hemF 3678962..3679879 (-) 918 WP_045371961.1 oxygen-dependent coproporphyrinogen oxidase -
  QMX76_RS17660 - 3679914..3680471 (-) 558 WP_282250121.1 L-threonylcarbamoyladenylate synthase -
  QMX76_RS17665 purE 3680671..3681156 (+) 486 WP_005429815.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QMX76_RS17670 - 3681161..3682294 (+) 1134 WP_282250123.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QMX76_RS17675 - 3682359..3682928 (-) 570 WP_282250125.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  QMX76_RS17680 - 3682951..3683430 (-) 480 WP_005429833.1 DUF494 family protein -
  QMX76_RS17685 dprA 3683433..3684542 (-) 1110 WP_282250127.1 DNA-processing protein DprA Machinery gene
  QMX76_RS17690 - 3684526..3685620 (-) 1095 WP_282250129.1 LysM peptidoglycan-binding domain-containing protein -
  QMX76_RS17695 def 3685759..3686277 (+) 519 WP_005450979.1 peptide deformylase -
  QMX76_RS17700 fmt 3686311..3687258 (+) 948 WP_134977846.1 methionyl-tRNA formyltransferase -
  QMX76_RS17705 rsmB 3687340..3688623 (+) 1284 WP_228175624.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39378.01 Da        Isoelectric Point: 5.5790

>NTDB_id=1156294 QMX76_RS17685 WP_282250127.1 3683433..3684542(-) (dprA) [Vibrio campbellii isolate BF5_0283]
MTPQNDIDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSQVDKEVDACLTWVAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGEASCLSQPQIAMVGSRNASVDGLQHARTFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLGQRVAENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIQNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1156294 QMX76_RS17685 WP_282250127.1 3683433..3684542(-) (dprA) [Vibrio campbellii isolate BF5_0283]
ATGACACCACAAAATGATATTGATCTCGCTGCCTGGTTAAAGCTTAGTTGTTTACCGGGCATCGGTGGGGTCAAGATGAA
TAAGCTGCTCAGCAAAGATACGCCGAGCAATATTGTCCAATACTCGACAGAGCAGCTTCAGCTTTTGGGCTTAACGGCAA
AACAGTTGCAAGCATGGTCGCAGGTCGATAAAGAAGTCGATGCTTGTCTGACTTGGGTTGCAGCATCTTCTCATCATCAT
ATTCTTACTTTGGCGGATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTACTCTTTGTAAAAGG
AGAGGCGAGCTGTTTGTCTCAACCTCAAATAGCTATGGTTGGCAGCCGTAATGCCAGTGTGGATGGGTTACAACATGCAA
GAACTTTTGCATCTGACTTGGTGCAACACGATCTGATCGTTACCAGTGGCTTAGCATTGGGTATTGATGGTCATGCTCAT
GATGGTGCGCTGTTGGCTGGCGGTAAAACCATCGCAGTGCTAGGTTCGGGATTAGAACAAGTGTACCCAGCAAGACACCG
AGGTTTGGGACAGCGAGTGGCCGAAAATGGAGCGCTTGTTTCTGAGTTTCGCCCTGATGCTAAGCCTCGCGCAGAAAACT
TTCCACGGCGTAATCGAATCATCAGTGGTTTGTCACTGGGTGTTTTGGTGGTGGAAGCGGCTGAAAAAAGTGGCTCCTTG
ATTACGGCGCGTTATGCTTTAGAACAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCACCCAACGCCAGTGG
CGGTAATCAATTGATTCAGAACGGGGCTTGTCTCGTACAAAATACTCAAGAGGTGCTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATAAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(307-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

99.187

100

0.992
  dprA Vibrio cholerae strain A1552

58.108

100

0.583
  dprA Glaesserella parasuis strain SC1401

47.453

100

0.48
  dprA Haemophilus influenzae Rd KW20

44.54

94.309

0.42
  dprA Legionella pneumophila strain ERS1305867

46.505

89.16

0.415
  dprA Neisseria meningitidis strain C311

37.084

100

0.393
  dprA Neisseria meningitidis MC58

37.084

100

0.393
  dprA Neisseria gonorrhoeae MS11

36.176

100

0.379
  dprA Neisseria gonorrhoeae strain FA1090

35.917

100

0.377

Multiple sequence alignment