Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QML80_RS00725 Genome accession   NZ_OX346405
Coordinates   141870..143117 (+) Length   415 a.a.
NCBI ID   WP_047341285.1    Uniprot ID   -
Organism   Enterococcus cecorum isolate CIRMBP-1228     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 136870..148117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML80_RS00705 (CIRMBP1228_00142) - 137444..138709 (+) 1266 WP_047341286.1 pitrilysin family protein -
  QML80_RS00710 (CIRMBP1228_00143) - 138702..139991 (+) 1290 WP_047338602.1 pitrilysin family protein -
  QML80_RS00715 (CIRMBP1228_00144) - 140178..141116 (+) 939 WP_047333979.1 helix-turn-helix domain-containing protein -
  QML80_RS00720 (CIRMBP1228_00145) pgsA 141227..141805 (+) 579 WP_047341289.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QML80_RS00725 (CIRMBP1228_00146) cinA 141870..143117 (+) 1248 WP_047341285.1 competence/damage-inducible protein A Machinery gene
  QML80_RS00730 (CIRMBP1228_00147) recA 143241..144287 (+) 1047 WP_047341284.1 recombinase RecA Machinery gene
  QML80_RS00735 (CIRMBP1228_00148) rny 144506..146065 (+) 1560 WP_047341283.1 ribonuclease Y -
  QML80_RS00740 (CIRMBP1228_00149) - 146283..146504 (+) 222 WP_016250396.1 helix-turn-helix transcriptional regulator -
  QML80_RS00745 (CIRMBP1228_00150) - 146491..147252 (+) 762 WP_016250395.1 DUF3169 family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45568.93 Da        Isoelectric Point: 4.9284

>NTDB_id=1155064 QML80_RS00725 WP_047341285.1 141870..143117(+) (cinA) [Enterococcus cecorum isolate CIRMBP-1228]
MNAEIIAVGTEILMGQIVNSNAAYLSEQLANLGINVYYHVAVGDNEKRLTACLERAKSRSDLIVLCGGLGPTQDDLTKQT
VAKFVNQALVYDPTGHARLMDYFAKTKREMTENNLLQALTFKDGRGIANPNGLAVGIYYEDSDHTHYLLLPGPPRELKAM
FRQNVVPLLRELNPQDTKLYSRVLRFYGIGESQLVTLLADFIDHQTNPTIAPYAKTNEVTLRLTANAPSQDQADRLLDEL
EEKIQALAGAYFYGYGDDFSLAEAMIAQLKEQKRTISVAESLTAGLFASTLGQYPGVSQVFKGGVVTYSLEMKAALLDID
ADYLREVGTVSEACVTLMAKNMQQKAQTDYAIAFSGVAGPDQLEGQAVGTVWMALATPNGVQTYCKQFPHGRNEIRQAAV
MFGLNLVYRALLAEE

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=1155064 QML80_RS00725 WP_047341285.1 141870..143117(+) (cinA) [Enterococcus cecorum isolate CIRMBP-1228]
ATGAATGCAGAAATCATTGCAGTCGGAACAGAGATTTTGATGGGGCAAATCGTTAATTCTAATGCGGCCTATCTTTCAGA
GCAATTAGCCAATTTGGGGATTAATGTCTATTATCATGTCGCAGTCGGAGATAATGAAAAGCGATTGACGGCCTGTCTTG
AACGTGCCAAAAGTCGGAGTGATTTAATCGTGCTTTGTGGTGGTTTGGGGCCAACGCAAGATGATTTAACCAAGCAAACT
GTAGCCAAATTTGTCAATCAAGCATTAGTCTATGATCCAACAGGGCATGCACGTTTGATGGATTATTTTGCCAAGACCAA
GCGAGAAATGACCGAAAATAATTTATTACAAGCCCTCACTTTTAAGGATGGTCGTGGTATTGCCAATCCAAATGGTCTAG
CGGTCGGTATTTATTATGAAGATAGCGATCATACTCACTATTTATTATTGCCTGGGCCACCGCGCGAGTTAAAAGCGATG
TTTCGTCAAAATGTCGTGCCACTTTTGCGTGAACTCAATCCGCAAGATACGAAGCTCTATTCTCGGGTGTTGCGTTTTTA
TGGGATTGGCGAATCGCAGTTAGTCACGCTTTTAGCTGATTTCATTGACCATCAGACTAACCCAACGATCGCTCCTTATG
CCAAAACCAATGAGGTGACGTTGCGTTTGACAGCCAATGCACCTAGCCAAGATCAAGCGGATAGGTTGCTTGATGAATTA
GAGGAGAAAATTCAAGCTTTGGCCGGTGCTTACTTTTATGGTTATGGGGATGATTTTTCTTTAGCGGAGGCGATGATTGC
CCAATTAAAAGAGCAAAAACGGACAATCAGTGTGGCTGAGAGTTTGACAGCCGGCCTTTTTGCTTCCACCTTGGGACAAT
ATCCGGGGGTGTCACAAGTCTTTAAAGGCGGTGTAGTCACTTATTCCCTTGAGATGAAGGCGGCTTTATTAGATATTGAT
GCCGATTATTTACGAGAAGTCGGGACGGTGAGTGAAGCTTGTGTCACCTTAATGGCTAAAAATATGCAGCAAAAAGCACA
AACGGATTATGCCATTGCTTTTAGTGGCGTGGCAGGACCGGATCAATTAGAAGGCCAAGCAGTCGGAACGGTCTGGATGG
CTTTGGCGACACCAAATGGGGTACAGACTTATTGCAAACAGTTCCCCCATGGCCGCAATGAAATCCGCCAAGCAGCTGTC
ATGTTTGGGTTAAATCTCGTTTACCGTGCGCTTTTAGCTGAAGAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

51.537

100

0.525
  cinA Streptococcus pneumoniae R6

51.3

100

0.523
  cinA Streptococcus pneumoniae Rx1

51.3

100

0.523
  cinA Streptococcus pneumoniae D39

51.064

100

0.52
  cinA Streptococcus mutans UA159

51.069

100

0.518
  cinA Streptococcus mitis SK321

50.827

100

0.518
  cinA Streptococcus mitis NCTC 12261

50.118

100

0.511
  cinA Bacillus subtilis subsp. subtilis str. 168

44.634

98.795

0.441
  cinA Streptococcus suis isolate S10

47.532

92.771

0.441

Multiple sequence alignment