Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QML79_RS01025 Genome accession   NZ_OX346402
Coordinates   203156..204409 (+) Length   417 a.a.
NCBI ID   WP_281955978.1    Uniprot ID   -
Organism   Enterococcus cecorum isolate CIRMBP-1261     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 198156..209409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML79_RS01005 (CIRMBP1261_00203) - 198729..199994 (+) 1266 WP_281955977.1 pitrilysin family protein -
  QML79_RS01010 (CIRMBP1261_00204) - 199987..201276 (+) 1290 WP_171313953.1 pitrilysin family protein -
  QML79_RS01015 (CIRMBP1261_00205) - 201464..202402 (+) 939 WP_047333979.1 helix-turn-helix domain-containing protein -
  QML79_RS01020 (CIRMBP1261_00206) pgsA 202513..203091 (+) 579 WP_026209940.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QML79_RS01025 (CIRMBP1261_00207) cinA 203156..204409 (+) 1254 WP_281955978.1 competence/damage-inducible protein A Machinery gene
  QML79_RS01030 (CIRMBP1261_00208) recA 204527..205573 (+) 1047 WP_016250398.1 recombinase RecA Machinery gene
  QML79_RS01035 (CIRMBP1261_00209) rny 205792..207351 (+) 1560 WP_047241715.1 ribonuclease Y -
  QML79_RS01040 (CIRMBP1261_00210) - 207567..207788 (+) 222 WP_047241714.1 helix-turn-helix transcriptional regulator -
  QML79_RS01045 (CIRMBP1261_00211) - 207775..208536 (+) 762 WP_047241713.1 DUF3169 family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45747.13 Da        Isoelectric Point: 4.8429

>NTDB_id=1154936 QML79_RS01025 WP_281955978.1 203156..204409(+) (cinA) [Enterococcus cecorum isolate CIRMBP-1261]
MNAEIIAVGTEILMGQIVNSNAAYLSEQLANLGINVYYHVAVGDNEKRLTACLERAKSRSDLIVLCGGLGPTQDDLTKQT
VAKFVNQALVYDPTGHARLMDYFAKTKREMTENNLLQALTFKDGRGIANPNGLAVGIYYEDSDHTHYLLLPGPPRELKAM
FRQNVVPLLREINPQDTKLYSRVLCFYGIGESQLVTLLADFIDHQTNPTLAPYAKTNEVTLRLTANASTQDQADRLLDEL
EEKIQALAGAYFYGYGDDFSLAEAMIAQLKEQKRTISVVESLTAGLFASTLGQYPGVSQVFKGGVVTYSLEMKAALLDID
ADYLREVGTVSEACVTLMAKNMQQKAQTDYAIAFSGVAGPDQLEGQAVGTVWMALATPNGVQTYCKQFPHGRNEIRQAAV
MFGLNLVYRALLAEEQA

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1154936 QML79_RS01025 WP_281955978.1 203156..204409(+) (cinA) [Enterococcus cecorum isolate CIRMBP-1261]
ATGAATGCAGAAATCATTGCAGTCGGAACAGAGATTTTGATGGGGCAAATCGTTAATTCTAATGCGGCCTATCTTTCAGA
GCAATTAGCCAATTTGGGTATTAATGTCTATTATCATGTCGCAGTCGGAGATAATGAAAAGCGATTGACGGCCTGTCTTG
AACGTGCCAAAAGTCGGAGTGATTTAATCGTGCTTTGTGGTGGTTTGGGGCCAACGCAAGATGATTTAACCAAGCAAACT
GTAGCCAAATTTGTCAATCAAGCATTAGTCTATGATCCAACAGGGCATGCACGTTTGATGGATTATTTTGCCAAGACCAA
GCGAGAAATGACCGAAAATAATTTATTACAAGCCCTCACTTTTAAGGATGGTCGTGGTATTGCCAATCCAAATGGTCTAG
CGGTCGGTATTTATTATGAAGATAGCGATCATACCCACTATTTATTATTGCCTGGGCCACCGCGCGAGTTAAAGGCGATG
TTTCGTCAAAATGTTGTGCCACTTTTGCGTGAAATCAATCCGCAAGATACGAAGCTCTATTCTCGGGTGTTGTGTTTTTA
TGGGATTGGCGAATCACAGTTAGTCACGCTTTTAGCTGATTTCATTGACCATCAGACCAACCCTACGCTAGCTCCCTATG
CCAAAACCAATGAAGTGACGTTGCGCTTGACAGCCAATGCATCTACCCAAGATCAAGCGGATAGGTTGCTTGATGAATTA
GAGGAGAAAATTCAAGCTTTGGCCGGTGCTTACTTTTATGGTTATGGGGATGATTTTTCTTTAGCGGAGGCGATGATTGC
CCAATTAAAAGAGCAAAAACGGACAATTAGTGTGGTTGAGAGTTTGACAGCCGGCCTTTTTGCTTCCACCTTGGGACAAT
ATCCGGGGGTGTCACAGGTCTTTAAAGGTGGTGTGGTCACTTATTCGCTTGAGATGAAGGCGGCTTTATTAGATATTGAT
GCTGATTATTTACGAGAAGTCGGGACGGTGAGTGAAGCTTGTGTCACCTTAATGGCTAAAAATATGCAGCAAAAAGCACA
AACGGATTATGCCATTGCTTTTAGTGGCGTGGCAGGACCGGATCAATTAGAAGGCCAAGCAGTCGGAACGGTCTGGATGG
CTTTGGCGACTCCAAATGGGGTACAGACTTATTGCAAACAGTTCCCCCATGGCCGAAATGAAATCCGCCAAGCCGCTGTC
ATGTTTGGGTTAAATCTCGTTTATCGCGCGCTTTTAGCTGAAGAACAAGCCTAA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(260-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

51.3

100

0.52
  cinA Streptococcus pneumoniae R6

51.064

100

0.518
  cinA Streptococcus pneumoniae Rx1

51.064

100

0.518
  cinA Streptococcus pneumoniae D39

50.827

100

0.516
  cinA Streptococcus mitis SK321

50.591

100

0.513
  cinA Streptococcus mutans UA159

50.356

100

0.508
  cinA Streptococcus mitis NCTC 12261

49.882

100

0.506
  cinA Streptococcus suis isolate S10

47.532

92.326

0.439
  cinA Bacillus subtilis subsp. subtilis str. 168

43.902

98.321

0.432

Multiple sequence alignment