Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VPUCM_RS15870 Genome accession   NZ_CP007004
Coordinates   3403781..3404893 (-) Length   370 a.a.
NCBI ID   WP_025442384.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus UCM-V493     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3398781..3409893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPUCM_RS15840 (VPUCM_3114) hemF 3399242..3400159 (-) 918 WP_025442381.1 oxygen-dependent coproporphyrinogen oxidase -
  VPUCM_RS15845 (VPUCM_3115) - 3400207..3400764 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  VPUCM_RS15850 (VPUCM_3116) purE 3400964..3401449 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VPUCM_RS15855 (VPUCM_3117) - 3401454..3402581 (+) 1128 WP_025442382.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VPUCM_RS15860 (VPUCM_3118) - 3402651..3403220 (-) 570 WP_025442383.1 type I DNA topoisomerase -
  VPUCM_RS15865 (VPUCM_3120) - 3403299..3403778 (-) 480 WP_005461440.1 DUF494 family protein -
  VPUCM_RS15870 (VPUCM_3121) dprA 3403781..3404893 (-) 1113 WP_025442384.1 DNA-processing protein DprA Machinery gene
  VPUCM_RS15875 (VPUCM_3122) - 3404877..3405971 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  VPUCM_RS15880 (VPUCM_3123) def 3406110..3406628 (+) 519 WP_005461416.1 peptide deformylase -
  VPUCM_RS15885 (VPUCM_3124) fmt 3406662..3407609 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  VPUCM_RS15890 (VPUCM_3125) rsmB 3407690..3408973 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39881.52 Da        Isoelectric Point: 6.4129

>NTDB_id=115477 VPUCM_RS15870 WP_025442384.1 3403781..3404893(-) (dprA) [Vibrio parahaemolyticus UCM-V493]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASVDKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRGLAQRVAENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=115477 VPUCM_RS15870 WP_025442384.1 3403781..3404893(-) (dprA) [Vibrio parahaemolyticus UCM-V493]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGTATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGTCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGGAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAACAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTGGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTGGCTTAGCGCAGCGAGTAGCAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

85.135

100

0.851
  dprA Vibrio cholerae strain A1552

58.649

100

0.586
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Haemophilus influenzae Rd KW20

46.588

91.081

0.424
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376

Multiple sequence alignment