Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NB068_RS07425 Genome accession   NZ_OW969598
Coordinates   1485690..1486187 (-) Length   165 a.a.
NCBI ID   WP_250314541.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1480690..1491187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS07415 yccS 1481868..1484018 (+) 2151 WP_250314961.1 YccS family putative transporter -
  NB068_RS07420 - 1484557..1485057 (+) 501 WP_250314540.1 transposase -
  NB068_RS07425 pilE 1485690..1486187 (-) 498 WP_250314541.1 pilin Machinery gene
  NB068_RS07430 - 1486203..1486511 (-) 309 WP_250314542.1 hypothetical protein -
  NB068_RS07435 - 1486722..1486988 (-) 267 WP_019271767.1 DUF3079 domain-containing protein -
  NB068_RS07440 pilA 1487544..1488929 (-) 1386 WP_250314543.1 signal recognition particle-docking protein FtsY Machinery gene
  NB068_RS07445 msrAB 1489075..1490643 (+) 1569 WP_250314544.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 16935.21 Da        Isoelectric Point: 7.8104

>NTDB_id=1153547 NB068_RS07425 WP_250314541.1 1485690..1486187(-) (pilE) [Neisseria sp. Marseille-Q6792]
MKAIQKGFTLIELMIVIAIVGVLAVVALPAYQDYTARAQMSEALTLAEGQKSAVVEYYSDKGQFPADNAAAGIAAASEIK
GKYVASVLVSKTGTDAAAKATITATMNSTGVNKDIQGKTLILEGSQNAGSFDWTCKAGTVADKFLPSSCRGNGTASTTSS
SSTSH

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1153547 NB068_RS07425 WP_250314541.1 1485690..1486187(-) (pilE) [Neisseria sp. Marseille-Q6792]
ATGAAAGCAATCCAAAAAGGTTTCACCCTGATCGAGTTGATGATCGTTATCGCCATCGTAGGTGTTTTGGCCGTTGTCGC
CCTGCCTGCATACCAAGACTACACTGCACGTGCGCAAATGTCTGAAGCCCTGACTTTGGCTGAAGGTCAAAAATCTGCAG
TAGTTGAATACTACTCCGATAAAGGCCAATTCCCTGCTGACAATGCAGCAGCAGGAATTGCTGCAGCAAGTGAGATTAAA
GGTAAATATGTTGCATCTGTATTAGTTAGTAAAACTGGCACGGATGCTGCTGCTAAGGCAACCATTACTGCCACAATGAA
TTCAACAGGTGTAAATAAAGATATTCAAGGTAAAACCTTGATTCTGGAAGGTTCACAAAACGCAGGCTCGTTTGACTGGA
CTTGTAAAGCAGGTACTGTGGCAGATAAATTCCTGCCGTCTTCCTGCCGCGGAAATGGTACTGCCTCTACTACTAGTAGT
TCTTCTACTTCTCACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-150)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

56.977

100

0.594
  pilE Neisseria gonorrhoeae MS11

55.689

100

0.564
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.751

100

0.418
  pilA/pilA1 Eikenella corrodens VA1

40.741

98.182

0.4
  pilA Ralstonia pseudosolanacearum GMI1000

37.87

100

0.388
  pilA2 Legionella pneumophila str. Paris

43.151

88.485

0.382
  pilA2 Legionella pneumophila strain ERS1305867

42.466

88.485

0.376
  comP Acinetobacter baylyi ADP1

39.735

91.515

0.364

Multiple sequence alignment