Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NBW44_RS00355 Genome accession   NZ_OW724079
Coordinates   52631..54613 (+) Length   660 a.a.
NCBI ID   WP_250306744.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 47631..59613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS00325 - 48288..48518 (+) 231 WP_250306739.1 DUF1146 family protein -
  NBW44_RS00330 murA 48544..49830 (+) 1287 WP_250306740.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NBW44_RS00335 - 49823..50011 (+) 189 WP_284346059.1 DNA-directed RNA polymerase subunit beta -
  NBW44_RS00340 endA 50058..50885 (+) 828 WP_250306742.1 DNA/RNA non-specific endonuclease Machinery gene
  NBW44_RS00345 - 51005..52336 (+) 1332 WP_250306743.1 hemolysin family protein -
  NBW44_RS00355 amiA 52631..54613 (+) 1983 WP_250306744.1 peptide ABC transporter substrate-binding protein Regulator
  NBW44_RS00360 amiC 54679..56175 (+) 1497 WP_250306745.1 ABC transporter permease Regulator
  NBW44_RS00365 amiD 56175..57101 (+) 927 WP_075566217.1 oligopeptide ABC transporter permease OppC Regulator
  NBW44_RS00370 amiE 57110..58177 (+) 1068 WP_075566219.1 ABC transporter ATP-binding protein Regulator
  NBW44_RS00375 amiF 58188..59114 (+) 927 WP_075566225.1 ATP-binding cassette domain-containing protein Regulator
  NBW44_RS00380 - 59266..59466 (+) 201 WP_250306746.1 mechanosensitive ion channel protein MscL -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 72762.76 Da        Isoelectric Point: 4.7491

>NTDB_id=1152570 NBW44_RS00355 WP_250306744.1 52631..54613(+) (amiA) [Streptococcus sp. Marseille-Q3533]
MKKSRIFALAGVALVAAGVLAACGSSKSSNDAEAPKAYGYTYTADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLT
PAVAEDWSVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKKSAAMYLAENSVKGLADYVAGNNKDFAS
VGVKAVDDYTLEYTLNKPEPYWNTKMAYSIFWPLNEEFEKSKGADFGKATDPTSLLYNGPFLLRGLTAKSSIEFVKNENY
WDKDNVHLDTVTLAYYDGSDQESLERNFTSGAYSYARLFPTSSNFSKVEETYKDNIYYSPQGPGIAGLGVNIDRQSYKYT
SKTTDEEKTATKKALLNKDFRQALNFAFDRTAYSAQLNGKDGAALAVRNLFVKPDFVSAGDKTFGDLVTEKVVSYGDEWK
DVNFADAQDGLYNADKAKAELAKAKKDLEADGVKFPIHLDIPVDQTSKNYIARIQSFKQSVETALGTDNVVIDIQQITTD
ELHNITYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNSETTKSYMGYDNPSSPAVAQVGLKEYDKLVDEAGNET
SDLAVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPIISRVVPFSASYTQSGDKGSDVYFKYLKLQSNTVTTKEYQEAREKW
LKEKAEANEKVQKELASHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1152570 NBW44_RS00355 WP_250306744.1 52631..54613(+) (amiA) [Streptococcus sp. Marseille-Q3533]
ATGAAAAAAAGTCGGATTTTTGCTCTAGCAGGCGTTGCTTTAGTTGCAGCTGGAGTTCTTGCTGCATGTGGGTCATCAAA
GTCATCTAATGATGCAGAGGCTCCAAAAGCTTACGGTTATACATATACCGCTGATCCAGAAACTTTGGATTATCTTATCT
CAGGTAAACAAAGTACAAAAGTGGCTACTTCAAATGGTATTGATGGTCTATTTACAAATGACAAATATGGAAACCTTACA
CCAGCAGTTGCAGAAGATTGGTCTGTATCAAAAGATGGTTTAACTTATACTTACAAGATTCGTAAGGGAGTAAAATGGTT
CACTTCTGATGGTGAAGAGTACGCAGAAGTAACTGCTAAAGACTTCGTAAATGGTTTAAAACACGCAGCTGATAAGAAAT
CAGCAGCAATGTACTTAGCTGAAAATTCAGTTAAAGGTCTTGCTGATTATGTAGCTGGAAACAATAAAGATTTTGCTTCA
GTTGGTGTTAAAGCAGTTGATGATTACACTCTTGAATATACCTTGAACAAGCCTGAGCCGTACTGGAATACTAAAATGGC
TTACTCAATCTTTTGGCCTTTAAATGAAGAATTTGAAAAATCAAAAGGTGCAGATTTTGGTAAAGCAACTGATCCAACTT
CATTGCTTTATAATGGTCCATTCTTGCTTAGAGGTTTGACTGCTAAGTCTTCTATTGAATTCGTGAAGAATGAAAACTAT
TGGGATAAAGATAATGTTCATTTGGATACTGTAACTCTTGCTTACTACGATGGTTCAGACCAAGAGTCACTTGAACGTAA
CTTTACAAGTGGAGCTTACAGCTATGCTCGTCTTTTCCCAACTAGCTCAAACTTCTCAAAAGTAGAAGAAACATATAAAG
ACAATATTTACTACAGTCCACAAGGTCCTGGTATCGCTGGTTTGGGTGTCAATATTGACCGTCAATCATACAAATACACT
TCAAAAACTACTGACGAAGAAAAGACTGCTACTAAGAAAGCTCTTCTTAACAAAGACTTCCGTCAAGCTTTGAACTTTGC
TTTTGATCGTACTGCTTATTCAGCTCAGCTAAATGGTAAGGATGGAGCCGCCCTTGCTGTTCGTAACCTCTTTGTCAAAC
CTGACTTTGTTTCTGCTGGAGATAAGACATTTGGTGACTTGGTTACTGAGAAAGTTGTTTCTTATGGTGATGAATGGAAA
GACGTAAACTTTGCGGATGCTCAAGATGGTCTTTACAATGCTGATAAGGCTAAAGCAGAACTAGCTAAAGCTAAAAAAGA
CCTTGAAGCAGATGGTGTAAAATTCCCAATCCACTTGGATATTCCAGTTGACCAAACATCTAAAAACTATATCGCTCGTA
TCCAATCCTTCAAACAATCTGTTGAGACGGCTTTGGGCACAGACAATGTAGTGATTGATATCCAACAAATCACTACAGAC
GAACTACACAATATCACATACTACGCAGCTAACGCAGCTGCAGAGGATTGGGACCTTTCAGGTGCAGTTGGATGGAACCC
TGACTATGAAGACCCATCAACTTACCTAGATATCTTGAAAACAACTAATAGCGAAACAACTAAGTCTTATATGGGATATG
ACAACCCATCTAGCCCAGCAGTTGCTCAAGTTGGTTTGAAAGAATATGATAAATTAGTTGACGAAGCTGGAAATGAAACA
AGCGACCTAGCAGTTCGTTATGAAAAATACGCAGCAGCTCAAGCTTGGTTGACAGATAGCTCACTCTTCCTTCCGGCTAT
GTCTTCAAGTGGTGCAGCACCAATTATTTCTCGTGTAGTACCATTCTCAGCATCTTACACTCAATCTGGTGATAAAGGTT
CAGATGTTTACTTCAAGTACCTCAAGTTACAATCAAATACTGTAACAACTAAAGAATATCAAGAAGCTCGTGAGAAATGG
CTTAAAGAAAAAGCAGAAGCAAATGAAAAAGTTCAAAAAGAATTAGCGAGCCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

66.818

100

0.668
  amiA3 Streptococcus thermophilus LMG 18311

66.415

100

0.665
  amiA3 Streptococcus thermophilus LMD-9

66.263

100

0.664

Multiple sequence alignment