Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   NBW44_RS00360 Genome accession   NZ_OW724079
Coordinates   54679..56175 (+) Length   498 a.a.
NCBI ID   WP_250306745.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 49679..61175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS00335 - 49823..50011 (+) 189 WP_284346059.1 DNA-directed RNA polymerase subunit beta -
  NBW44_RS00340 endA 50058..50885 (+) 828 WP_250306742.1 DNA/RNA non-specific endonuclease Machinery gene
  NBW44_RS00345 - 51005..52336 (+) 1332 WP_250306743.1 hemolysin family protein -
  NBW44_RS00355 amiA 52631..54613 (+) 1983 WP_250306744.1 peptide ABC transporter substrate-binding protein Regulator
  NBW44_RS00360 amiC 54679..56175 (+) 1497 WP_250306745.1 ABC transporter permease Regulator
  NBW44_RS00365 amiD 56175..57101 (+) 927 WP_075566217.1 oligopeptide ABC transporter permease OppC Regulator
  NBW44_RS00370 amiE 57110..58177 (+) 1068 WP_075566219.1 ABC transporter ATP-binding protein Regulator
  NBW44_RS00375 amiF 58188..59114 (+) 927 WP_075566225.1 ATP-binding cassette domain-containing protein Regulator
  NBW44_RS00380 - 59266..59466 (+) 201 WP_250306746.1 mechanosensitive ion channel protein MscL -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55909.29 Da        Isoelectric Point: 8.9747

>NTDB_id=1152571 NBW44_RS00360 WP_250306745.1 54679..56175(+) (amiC) [Streptococcus sp. Marseille-Q3533]
MKKYVFMRILRSLVSIFLVTTLIYTIIYTLVPRKLIFKQDTNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SIDSSVTVDANDTNKAIYEKYIQQLGNGWTLGEFTESGQFYATREIPIFERVFHFYANLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
NIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMITSSAITGLIGLVISYSIAIPLGSAMARFKNTWIDSFSTGT
LTFLLALPTIALVYIIRLIGSSIGFPDSFPILGAGDWRSYVLPAVILGLLGAPTMAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGSIIGVIAGATLTETVFAFPGMGKMLIDSVKASNNNMVVGLVFIFTCISIFSNLIGD
IWMTMIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1152571 NBW44_RS00360 WP_250306745.1 54679..56175(+) (amiC) [Streptococcus sp. Marseille-Q3533]
ATGAAAAAATATGTTTTTATGCGTATCTTGCGGTCGTTGGTCTCTATCTTTTTAGTGACGACCTTGATCTACACGATTAT
CTATACGTTAGTTCCACGGAAGTTGATTTTCAAACAAGATACTAACTACAATAAAATTGCAACAACAGCTGATAAACGGG
ATAATTATGAAAACACTGTTTTTGAGCGTATGGGGTATATTGAATACTACGATACAAAAGAGTTGCAAGAAAAAGCTAGT
AGCATTGACTCTTCAGTGACAGTAGATGCAAATGATACAAATAAAGCTATCTATGAAAAATATATCCAACAACTTGGTAA
CGGTTGGACTTTGGGTGAATTCACAGAGAGCGGTCAATTCTATGCAACACGTGAAATTCCTATTTTTGAACGTGTCTTCC
ACTTCTATGCAAACTTGCTTGATATTGACCATACAAATAAAATTCAAGATCCAGAAAATCCAAACTTGGAGCGATATTTA
CGTTTTGAAAATGACCCTGCTATCGGCTGGTCTCTAGTTGGATCAGGTACAAAACATAAGTACCTCTTGTATTTCAACAG
CCAGTTTCCATTTGTTCACCAAAACTTTGTCAACTTGAACTTAGGAGATTCTTACCCAACTTATGCCAATACTCCTGTTC
TTCAAGTTATCACACAAGGTCAAGGACAAACCAAGACTTCAGAAGTTCAATTCCCAACAGGTAAGAAAACTTCATCAGTC
AACATTTACTCAAGAACATACAAATCTCCAAGTCAAGCAGATGCACGTGAAGTAGCAAACTATGGTAAGGATGATCCTTA
TACAGCTACTGAAAGCAATTATCAGTATCCTTCAATGATTACAAGCTCTGCTATTACAGGTTTAATTGGTCTTGTAATTT
CATACTCTATTGCGATTCCGCTTGGTTCTGCAATGGCTCGATTCAAGAATACTTGGATTGATAGTTTCTCAACAGGAACT
TTGACTTTCTTGCTTGCCCTTCCAACCATTGCCTTGGTTTATATCATTCGTTTGATTGGTTCGTCTATCGGATTCCCTGA
TTCATTCCCAATCTTGGGTGCAGGTGATTGGCGTTCATATGTCCTTCCTGCAGTGATTTTGGGCTTGTTGGGTGCACCTA
CTATGGCAATTTGGATTCGTCGTTACATGATTGACTTACAATCCCAAGACTTTGTTCGTTTTGCACGTGCAAAAGGTCTA
TCTGAGAAAGAAATTTCAAACAAACACATCTTTAAGAACGCCATGGTTCCATTGGTTTCAGGAATTCCAGGTTCTATCAT
TGGAGTTATTGCTGGAGCAACTCTTACGGAAACAGTCTTCGCCTTTCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCAAATAACAACATGGTAGTTGGTCTTGTCTTTATCTTCACTTGTATCTCAATCTTCTCAAACCTTATTGGGGAT
ATTTGGATGACTATGATTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.309

100

0.773
  amiC Streptococcus thermophilus LMG 18311

76.707

100

0.767
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763

Multiple sequence alignment