Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NBW44_RS00340 Genome accession   NZ_OW724079
Coordinates   50058..50885 (+) Length   275 a.a.
NCBI ID   WP_250306742.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 45058..55885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS00305 asnA 45139..46131 (+) 993 WP_075566194.1 aspartate--ammonia ligase -
  NBW44_RS00310 rsmD 46193..46732 (+) 540 WP_250306736.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NBW44_RS00315 coaD 46722..47210 (+) 489 WP_250306737.1 pantetheine-phosphate adenylyltransferase -
  NBW44_RS00320 sepM 47194..48231 (+) 1038 WP_250306738.1 SepM family pheromone-processing serine protease Regulator
  NBW44_RS00325 - 48288..48518 (+) 231 WP_250306739.1 DUF1146 family protein -
  NBW44_RS00330 murA 48544..49830 (+) 1287 WP_250306740.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NBW44_RS00335 - 49823..50011 (+) 189 WP_284346059.1 DNA-directed RNA polymerase subunit beta -
  NBW44_RS00340 endA 50058..50885 (+) 828 WP_250306742.1 DNA/RNA non-specific endonuclease Machinery gene
  NBW44_RS00345 - 51005..52336 (+) 1332 WP_250306743.1 hemolysin family protein -
  NBW44_RS00355 amiA 52631..54613 (+) 1983 WP_250306744.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 30140.85 Da        Isoelectric Point: 9.9856

>NTDB_id=1152569 NBW44_RS00340 WP_250306742.1 50058..50885(+) (endA) [Streptococcus sp. Marseille-Q3533]
MTKKTRQALIGLLLFLLLSAGSYYIKQMQSSNTAPQTRVKQKSQSFDTPSQELAESVLTDTVKKQIKGTLEWNGAGAFIV
NGNKTNLDAKVSSKPYADNKTKTVGGETVPTVANALMSKATRQYKDREETGNGSTSWTPAGWHQVKNLKGTYNHAVDRGH
LLGYALIGGLDGFDASTSNPKNIAVQTAWANQARAEDSTGQNYYESLVRKALDQNKRVRYRVTLLYATEEDLVPSASQIE
AKSSDGELEFNVVVPNVQKGIQLDYRTGKVTVTKN

Nucleotide


Download         Length: 828 bp        

>NTDB_id=1152569 NBW44_RS00340 WP_250306742.1 50058..50885(+) (endA) [Streptococcus sp. Marseille-Q3533]
ATGACCAAAAAAACAAGGCAGGCCCTGATTGGCCTCTTGCTCTTTTTGCTCTTGTCAGCAGGAAGCTACTATATTAAACA
AATGCAGTCTTCCAACACTGCACCACAAACACGAGTAAAACAAAAATCCCAGTCGTTTGATACTCCAAGTCAAGAATTGG
CAGAGAGTGTACTGACTGATACGGTCAAAAAACAAATAAAGGGTACTCTTGAGTGGAATGGGGCAGGAGCCTTTATCGTA
AATGGGAACAAAACGAACTTAGATGCAAAGGTTTCAAGTAAACCTTATGCTGATAACAAGACAAAAACTGTAGGTGGGGA
GACGGTCCCAACTGTTGCTAATGCCCTCATGTCAAAAGCAACAAGGCAGTATAAGGATCGTGAAGAAACCGGAAATGGTT
CGACATCATGGACGCCAGCAGGATGGCATCAGGTCAAAAACTTAAAAGGGACTTATAATCACGCTGTAGATAGAGGCCAT
TTATTAGGCTATGCCTTGATTGGTGGCTTAGATGGCTTTGATGCATCTACTAGCAATCCCAAAAATATCGCTGTACAAAC
AGCCTGGGCCAACCAAGCACGCGCAGAAGATTCGACTGGACAAAACTACTATGAAAGTTTAGTTCGAAAGGCTTTGGATC
AAAATAAGCGCGTGCGTTACCGTGTCACATTGCTCTACGCTACAGAAGAAGATTTGGTTCCTTCTGCATCTCAGATTGAA
GCCAAATCATCTGATGGTGAATTGGAGTTTAACGTCGTAGTTCCTAACGTTCAAAAGGGAATTCAGTTAGATTATCGAAC
AGGAAAAGTAACTGTTACAAAGAACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(76-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

85.036

99.636

0.847
  endA Streptococcus pneumoniae D39

85.036

99.636

0.847
  endA Streptococcus pneumoniae R6

85.036

99.636

0.847
  endA Streptococcus pneumoniae TIGR4

85.036

99.636

0.847

Multiple sequence alignment