Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   NBW44_RS00375 Genome accession   NZ_OW724079
Coordinates   58188..59114 (+) Length   308 a.a.
NCBI ID   WP_075566225.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 53188..64114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS00360 amiC 54679..56175 (+) 1497 WP_250306745.1 ABC transporter permease Regulator
  NBW44_RS00365 amiD 56175..57101 (+) 927 WP_075566217.1 oligopeptide ABC transporter permease OppC Regulator
  NBW44_RS00370 amiE 57110..58177 (+) 1068 WP_075566219.1 ABC transporter ATP-binding protein Regulator
  NBW44_RS00375 amiF 58188..59114 (+) 927 WP_075566225.1 ATP-binding cassette domain-containing protein Regulator
  NBW44_RS00380 - 59266..59466 (+) 201 WP_250306746.1 mechanosensitive ion channel protein MscL -
  NBW44_RS00385 - 59747..62155 (-) 2409 Protein_58 glycoside hydrolase N-terminal domain-containing protein -
  NBW44_RS00390 - 62445..62693 (+) 249 WP_075226808.1 YneF family protein -
  NBW44_RS00395 racE 62919..63713 (+) 795 WP_250306748.1 glutamate racemase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34912.11 Da        Isoelectric Point: 6.9304

>NTDB_id=1152574 NBW44_RS00375 WP_075566225.1 58188..59114(+) (amiF) [Streptococcus sp. Marseille-Q3533]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNHTSKGDILFEGKKINGKKSRA
QEAEVIRRIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQEKVKKIISEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPNQHDYETDKPSMVEIRPGHYVWANQAELERYKNDLK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1152574 NBW44_RS00375 WP_075566225.1 58188..59114(+) (amiF) [Streptococcus sp. Marseille-Q3533]
ATGTCTGAAAAATTAGTAGAAATTAAAGACTTAGAGATTTCCTTCGGTGAAGGAAGCAAAAAGTTTGTAGCCGTTAAAAA
TGCTAACTTCTTTATCAACAAAGGTGAAACTTTCTCTCTAGTTGGTGAGTCGGGTAGTGGTAAAACAACGATTGGTCGTG
CAATTATCGGTTTGAATCATACCAGTAAAGGGGATATCCTCTTCGAAGGTAAAAAGATCAACGGTAAAAAATCACGAGCT
CAAGAAGCTGAAGTAATCCGTCGTATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAGCGTGCAACGGTTGA
CTATATCATTTCTGAAGGTCTTTATAATTTCCATCTATTTAAGGATGAGGAAGAAAGACAAGAGAAAGTTAAAAAGATTA
TTAGTGAAGTTGGACTTTTGGCTGAACATTTGACACGTTATCCTCATGAGTTTTCAGGTGGACAACGTCAACGTATTGGT
ATCGCTCGTGCCTTGGTTATGCAACCTGACTTTGTTATCGCAGATGAGCCGATTTCAGCCTTGGACGTTTCAGTTCGTGC
CCAAGTTTTGAACTTGCTCAAGAAATTCCAAAAAGAACTTGGCTTGACTTACCTCTTTATTGCCCATGACTTGTCAGTTG
TTCGTTTCATCTCTGACCGTATTGCAGTTATTTACAAAGGGGTCATTGTTGAAGTCGCGGAAACGGAAGAATTGTTTAAT
AATCCAATCCATCCGTATACTCAAGCTCTCTTGTCTGCAGTACCGATTCCAGACCCAATTTTGGAACGTAAAAAAGTCTT
AAAAGTCTATGATCCAAACCAACACGACTATGAGACTGATAAACCATCTATGGTTGAAATCCGACCAGGTCATTATGTTT
GGGCTAACCAAGCTGAATTGGAACGCTATAAAAATGATTTGAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.294

99.351

0.847
  amiF Streptococcus thermophilus LMG 18311

84.967

99.351

0.844
  amiF Streptococcus thermophilus LMD-9

84.641

99.351

0.841

Multiple sequence alignment