Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   NBW44_RS00370 Genome accession   NZ_OW724079
Coordinates   57110..58177 (+) Length   355 a.a.
NCBI ID   WP_075566219.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 52110..63177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS00355 amiA 52631..54613 (+) 1983 WP_250306744.1 peptide ABC transporter substrate-binding protein Regulator
  NBW44_RS00360 amiC 54679..56175 (+) 1497 WP_250306745.1 ABC transporter permease Regulator
  NBW44_RS00365 amiD 56175..57101 (+) 927 WP_075566217.1 oligopeptide ABC transporter permease OppC Regulator
  NBW44_RS00370 amiE 57110..58177 (+) 1068 WP_075566219.1 ABC transporter ATP-binding protein Regulator
  NBW44_RS00375 amiF 58188..59114 (+) 927 WP_075566225.1 ATP-binding cassette domain-containing protein Regulator
  NBW44_RS00380 - 59266..59466 (+) 201 WP_250306746.1 mechanosensitive ion channel protein MscL -
  NBW44_RS00385 - 59747..62155 (-) 2409 Protein_58 glycoside hydrolase N-terminal domain-containing protein -
  NBW44_RS00390 - 62445..62693 (+) 249 WP_075226808.1 YneF family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39668.42 Da        Isoelectric Point: 4.7696

>NTDB_id=1152573 NBW44_RS00370 WP_075566219.1 57110..58177(+) (amiE) [Streptococcus sp. Marseille-Q3533]
MTKEKNVILSAQDIVVEFDVRDKVLTAIRGVSLELIEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAFGNIDYRGQDL
TALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIIKHQGKTAKEAKEMAIDYMNKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYTELKGDAFALRSDYAMKIDFEEKAPQFAVSDTHWAK
TWLLDERAPKVEKPAVISNLHDKIRERMGLVHLEN

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1152573 NBW44_RS00370 WP_075566219.1 57110..58177(+) (amiE) [Streptococcus sp. Marseille-Q3533]
ATGACAAAAGAAAAAAATGTAATTTTATCTGCTCAAGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
TATTCGAGGAGTTTCTCTTGAGTTGATTGAAGGAGAAGTTCTTGCTTTAGTGGGAGAATCTGGATCCGGTAAATCAGTTT
TGACAAAAACATTCACAGGAATGTTGGAAGAAAATGGACGTATTGCTTTTGGTAACATTGATTACCGTGGTCAAGACCTA
ACAGCACTTTCTTCACACAAGGATTGGGAACAGATTCGTGGGGCTAAGATCGCAACGATCTTCCAAGATCCTATGACTAG
TTTGGACCCAATTAAAACAATCGGAAGCCAAATTACCGAAGTTATCATTAAACACCAAGGTAAAACAGCTAAAGAAGCAA
AAGAAATGGCTATCGACTATATGAATAAGGTTGGTATTCCGGATGCTGAGAAGCGATTTGAAGAGTACCCATTCCAATAT
TCTGGAGGGATGCGTCAACGTATCGTTATCGCTATTGCACTTGCGTGTCGTCCAGATGTTCTTATCTGTGATGAGCCAAC
TACGGCCCTCGATGTTACTATTCAAGCTCAGATTATTGACTTGCTGAAGTCGCTTCAAAATGAATATCACTTTACAACTA
TCTTTATCACCCACGACCTCGGTGTTGTAGCAAGTATTGCAGATAAAGTTGCAGTTATGTATGCTGGTGAGATTGTTGAG
TACGGTACTGTTGAAGAAATATTTTATGATCCTCGTCATCCCTATACTTGGAGCCTATTATCAAGTTTGCCACAGTTAGC
TGATGATAAAGGAGAACTATATTCAATTCCAGGTACTCCTCCGTCACTATATACAGAATTAAAAGGTGATGCATTTGCTC
TTCGTTCAGATTACGCAATGAAGATCGATTTTGAAGAAAAAGCACCTCAATTTGCTGTGTCAGATACTCATTGGGCTAAA
ACTTGGTTGCTTGATGAACGAGCTCCAAAAGTTGAAAAACCAGCAGTAATTTCAAATTTACATGACAAGATTCGTGAGAG
AATGGGTCTTGTTCATCTAGAAAACTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.819

99.437

0.873
  amiE Streptococcus thermophilus LMG 18311

85.836

99.437

0.854
  amiE Streptococcus thermophilus LMD-9

85.836

99.437

0.854
  oppD Streptococcus mutans UA159

55.682

99.155

0.552

Multiple sequence alignment