Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | F544_RS04875 | Genome accession | NZ_CP006956 |
| Coordinates | 1027296..1027742 (-) | Length | 148 a.a. |
| NCBI ID | WP_025267127.1 | Uniprot ID | A0A4V7IAF9 |
| Organism | Bibersteinia trehalosi USDA-ARS-USMARC-190 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1022296..1032742
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F544_RS04845 (F544_9680) | - | 1022520..1023074 (+) | 555 | WP_025267130.1 | hypothetical protein | - |
| F544_RS04850 (F544_9690) | yacG | 1023134..1023340 (-) | 207 | WP_015432346.1 | DNA gyrase inhibitor YacG | - |
| F544_RS04855 (F544_9700) | coaE | 1023340..1023960 (-) | 621 | WP_025289236.1 | dephospho-CoA kinase | - |
| F544_RS04860 (F544_9710) | - | 1023990..1024655 (-) | 666 | WP_025289237.1 | prepilin peptidase | - |
| F544_RS04865 (F544_9720) | pilC | 1024652..1025848 (-) | 1197 | WP_025289238.1 | type II secretion system F family protein | Machinery gene |
| F544_RS04870 (F544_9730) | pilB | 1025841..1027238 (-) | 1398 | WP_025289239.1 | GspE/PulE family protein | Machinery gene |
| F544_RS04875 (F544_9740) | pilA | 1027296..1027742 (-) | 447 | WP_025267127.1 | prepilin peptidase-dependent pilin | Machinery gene |
| F544_RS04880 (F544_9750) | radA | 1027917..1029296 (+) | 1380 | WP_025289240.1 | DNA repair protein RadA | Machinery gene |
| F544_RS04885 (F544_9760) | - | 1029388..1030932 (-) | 1545 | WP_025289241.1 | Na+/H+ antiporter NhaC family protein | - |
| F544_RS04890 (F544_9780) | - | 1031437..1031838 (+) | 402 | WP_015432355.1 | H-NS family nucleoid-associated regulatory protein | - |
| F544_RS04895 (F544_9790) | rnhA | 1032181..1032639 (+) | 459 | WP_025289242.1 | ribonuclease HI | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15806.99 Da Isoelectric Point: 7.5807
>NTDB_id=115245 F544_RS04875 WP_025267127.1 1027296..1027742(-) (pilA) [Bibersteinia trehalosi USDA-ARS-USMARC-190]
MKISNFRPLQKGFTLIELMIVIAIIAILATIAIPSYTNYTQKAALSEMLRASASYKSDVEICIYNTGATTNCSAGSNGIQ
AAKTESSDTKYLKSVSVTNGIINVEGKGSLDGYSYTMTPKFANNNITWSVNCTGADTGLFPANFCSSE
MKISNFRPLQKGFTLIELMIVIAIIAILATIAIPSYTNYTQKAALSEMLRASASYKSDVEICIYNTGATTNCSAGSNGIQ
AAKTESSDTKYLKSVSVTNGIINVEGKGSLDGYSYTMTPKFANNNITWSVNCTGADTGLFPANFCSSE
Nucleotide
Download Length: 447 bp
>NTDB_id=115245 F544_RS04875 WP_025267127.1 1027296..1027742(-) (pilA) [Bibersteinia trehalosi USDA-ARS-USMARC-190]
ATGAAAATTTCTAACTTTCGCCCACTTCAAAAGGGCTTTACTTTAATTGAACTCATGATCGTGATTGCGATCATTGCAAT
TCTCGCTACTATCGCGATTCCATCTTATACCAACTATACTCAAAAAGCGGCTCTCTCTGAAATGTTACGTGCTTCTGCCT
CTTACAAATCAGATGTAGAAATTTGTATTTATAACACAGGGGCTACTACCAACTGCTCCGCAGGCTCAAATGGAATTCAA
GCTGCGAAAACAGAGAGTAGTGATACAAAATATTTGAAATCAGTCTCTGTCACTAATGGCATTATTAATGTTGAAGGTAA
AGGCAGCCTTGATGGATATAGCTATACCATGACACCTAAATTTGCTAACAACAATATTACTTGGTCAGTCAATTGCACTG
GGGCAGACACAGGCTTATTCCCTGCTAATTTCTGTAGTTCGGAATAA
ATGAAAATTTCTAACTTTCGCCCACTTCAAAAGGGCTTTACTTTAATTGAACTCATGATCGTGATTGCGATCATTGCAAT
TCTCGCTACTATCGCGATTCCATCTTATACCAACTATACTCAAAAAGCGGCTCTCTCTGAAATGTTACGTGCTTCTGCCT
CTTACAAATCAGATGTAGAAATTTGTATTTATAACACAGGGGCTACTACCAACTGCTCCGCAGGCTCAAATGGAATTCAA
GCTGCGAAAACAGAGAGTAGTGATACAAAATATTTGAAATCAGTCTCTGTCACTAATGGCATTATTAATGTTGAAGGTAA
AGGCAGCCTTGATGGATATAGCTATACCATGACACCTAAATTTGCTAACAACAATATTACTTGGTCAGTCAATTGCACTG
GGGCAGACACAGGCTTATTCCCTGCTAATTTCTGTAGTTCGGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
71.141 |
100 |
0.716 |
| pilA | Haemophilus influenzae 86-028NP |
57.432 |
100 |
0.574 |
| pilA | Haemophilus influenzae Rd KW20 |
56.081 |
100 |
0.561 |
| comP | Acinetobacter baylyi ADP1 |
44.094 |
85.811 |
0.378 |
| pilA | Vibrio campbellii strain DS40M4 |
38.028 |
95.946 |
0.365 |