Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | F544_RS04865 | Genome accession | NZ_CP006956 |
| Coordinates | 1024652..1025848 (-) | Length | 398 a.a. |
| NCBI ID | WP_025289238.1 | Uniprot ID | W0R624 |
| Organism | Bibersteinia trehalosi USDA-ARS-USMARC-190 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1019652..1030848
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F544_RS04830 (F544_9650) | - | 1019818..1020336 (+) | 519 | WP_015432342.1 | PTS sugar transporter subunit IIA | - |
| F544_RS04835 (F544_9660) | rapZ | 1020336..1021199 (+) | 864 | WP_025289235.1 | RNase adapter RapZ | - |
| F544_RS04840 (F544_9670) | - | 1021201..1022385 (+) | 1185 | WP_025267131.1 | FAD-dependent monooxygenase | - |
| F544_RS04845 (F544_9680) | - | 1022520..1023074 (+) | 555 | WP_025267130.1 | hypothetical protein | - |
| F544_RS04850 (F544_9690) | yacG | 1023134..1023340 (-) | 207 | WP_015432346.1 | DNA gyrase inhibitor YacG | - |
| F544_RS04855 (F544_9700) | coaE | 1023340..1023960 (-) | 621 | WP_025289236.1 | dephospho-CoA kinase | - |
| F544_RS04860 (F544_9710) | - | 1023990..1024655 (-) | 666 | WP_025289237.1 | prepilin peptidase | - |
| F544_RS04865 (F544_9720) | pilC | 1024652..1025848 (-) | 1197 | WP_025289238.1 | type II secretion system F family protein | Machinery gene |
| F544_RS04870 (F544_9730) | pilB | 1025841..1027238 (-) | 1398 | WP_025289239.1 | GspE/PulE family protein | Machinery gene |
| F544_RS04875 (F544_9740) | pilA | 1027296..1027742 (-) | 447 | WP_025267127.1 | prepilin peptidase-dependent pilin | Machinery gene |
| F544_RS04880 (F544_9750) | radA | 1027917..1029296 (+) | 1380 | WP_025289240.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 398 a.a. Molecular weight: 45990.49 Da Isoelectric Point: 9.9147
>NTDB_id=115243 F544_RS04865 WP_025289238.1 1024652..1025848(-) (pilC) [Bibersteinia trehalosi USDA-ARS-USMARC-190]
MFNVYEFRWQARDRFGQKQSGKQLAESTQQLEQRLQQQGFSHIRIQRNFVLPQQPKSSEITQFLQQFALLTNATIPLKLS
LTMLLENCQNSKIYLWLRAVIQQLENGFSLAQSFGNTGKFLTQQEIQLIKIGEQSGELNKILSNITQNRQRSEQLNKKLK
KILFYPIMILFISISLSVLLLLFIVPKFAELYDAKNRELPLMTKILFYLSDFLQHHFIALLISIISLSLLLYFISKKTQI
LTRLRAQILSILPLFKQIHLQARLVFFCYNCGLMLQAHLRLDSVLDSFISAKSNDPILSPELSKTLARLKQGYRLSDCLP
AHLFPNEVLQMIKVGEQSGKLAEMLLQVSEIYRQKLEYQIDLLSQMLEPLLMLVIGFIVGTILIGLYLPIFDMGAMIE
MFNVYEFRWQARDRFGQKQSGKQLAESTQQLEQRLQQQGFSHIRIQRNFVLPQQPKSSEITQFLQQFALLTNATIPLKLS
LTMLLENCQNSKIYLWLRAVIQQLENGFSLAQSFGNTGKFLTQQEIQLIKIGEQSGELNKILSNITQNRQRSEQLNKKLK
KILFYPIMILFISISLSVLLLLFIVPKFAELYDAKNRELPLMTKILFYLSDFLQHHFIALLISIISLSLLLYFISKKTQI
LTRLRAQILSILPLFKQIHLQARLVFFCYNCGLMLQAHLRLDSVLDSFISAKSNDPILSPELSKTLARLKQGYRLSDCLP
AHLFPNEVLQMIKVGEQSGKLAEMLLQVSEIYRQKLEYQIDLLSQMLEPLLMLVIGFIVGTILIGLYLPIFDMGAMIE
Nucleotide
Download Length: 1197 bp
>NTDB_id=115243 F544_RS04865 WP_025289238.1 1024652..1025848(-) (pilC) [Bibersteinia trehalosi USDA-ARS-USMARC-190]
ATGTTTAACGTTTATGAATTTCGTTGGCAAGCACGTGATCGTTTTGGGCAAAAACAATCTGGTAAACAGCTTGCTGAAAG
CACGCAACAACTTGAGCAACGCTTGCAACAGCAGGGCTTCAGTCATATTCGCATTCAGCGGAATTTTGTTTTACCACAAC
AACCAAAATCAAGTGAAATTACACAATTTTTACAGCAATTTGCTCTGCTGACTAACGCAACTATTCCGCTAAAACTCAGC
TTAACAATGCTGTTAGAAAACTGCCAAAACAGCAAAATATATTTGTGGCTAAGAGCTGTTATTCAGCAACTTGAAAATGG
CTTCTCTCTTGCTCAATCCTTTGGAAATACGGGGAAATTTCTTACACAGCAAGAAATACAGCTCATTAAAATTGGCGAAC
AAAGTGGCGAGCTCAATAAGATTTTAAGTAATATCACACAAAATCGTCAACGTAGTGAACAACTCAATAAAAAACTCAAA
AAAATTTTATTTTATCCCATCATGATCTTGTTCATTTCCATTAGTTTATCTGTACTTCTTCTATTATTTATCGTTCCTAA
ATTCGCAGAGCTTTATGATGCTAAAAACAGAGAGCTACCGTTAATGACAAAGATTCTCTTCTACTTGTCAGATTTTTTAC
AACACCACTTTATTGCACTACTCATTTCCATTATAAGTTTAAGCTTGTTACTGTATTTTATTAGTAAAAAAACTCAAATT
CTTACCCGCTTGAGAGCTCAGATTCTTTCTATTCTACCACTGTTTAAGCAAATCCATTTACAGGCTCGTTTAGTCTTTTT
CTGCTACAACTGTGGATTAATGCTGCAAGCACACTTACGTCTTGACAGCGTACTTGATAGTTTTATCTCAGCCAAAAGCA
ACGATCCTATTTTATCCCCCGAACTTTCTAAAACATTAGCTCGCTTAAAGCAAGGCTATAGGCTCTCTGACTGCTTACCT
GCCCATTTATTTCCAAATGAAGTATTACAAATGATAAAGGTAGGTGAACAAAGTGGGAAACTGGCCGAGATGTTATTACA
AGTGAGTGAAATTTATCGCCAAAAATTAGAATATCAAATTGACTTACTTTCACAAATGCTAGAGCCGCTGTTAATGCTCG
TGATAGGATTCATTGTCGGCACTATTTTAATCGGTTTATATCTACCTATTTTTGATATGGGAGCAATGATTGAATGA
ATGTTTAACGTTTATGAATTTCGTTGGCAAGCACGTGATCGTTTTGGGCAAAAACAATCTGGTAAACAGCTTGCTGAAAG
CACGCAACAACTTGAGCAACGCTTGCAACAGCAGGGCTTCAGTCATATTCGCATTCAGCGGAATTTTGTTTTACCACAAC
AACCAAAATCAAGTGAAATTACACAATTTTTACAGCAATTTGCTCTGCTGACTAACGCAACTATTCCGCTAAAACTCAGC
TTAACAATGCTGTTAGAAAACTGCCAAAACAGCAAAATATATTTGTGGCTAAGAGCTGTTATTCAGCAACTTGAAAATGG
CTTCTCTCTTGCTCAATCCTTTGGAAATACGGGGAAATTTCTTACACAGCAAGAAATACAGCTCATTAAAATTGGCGAAC
AAAGTGGCGAGCTCAATAAGATTTTAAGTAATATCACACAAAATCGTCAACGTAGTGAACAACTCAATAAAAAACTCAAA
AAAATTTTATTTTATCCCATCATGATCTTGTTCATTTCCATTAGTTTATCTGTACTTCTTCTATTATTTATCGTTCCTAA
ATTCGCAGAGCTTTATGATGCTAAAAACAGAGAGCTACCGTTAATGACAAAGATTCTCTTCTACTTGTCAGATTTTTTAC
AACACCACTTTATTGCACTACTCATTTCCATTATAAGTTTAAGCTTGTTACTGTATTTTATTAGTAAAAAAACTCAAATT
CTTACCCGCTTGAGAGCTCAGATTCTTTCTATTCTACCACTGTTTAAGCAAATCCATTTACAGGCTCGTTTAGTCTTTTT
CTGCTACAACTGTGGATTAATGCTGCAAGCACACTTACGTCTTGACAGCGTACTTGATAGTTTTATCTCAGCCAAAAGCA
ACGATCCTATTTTATCCCCCGAACTTTCTAAAACATTAGCTCGCTTAAAGCAAGGCTATAGGCTCTCTGACTGCTTACCT
GCCCATTTATTTCCAAATGAAGTATTACAAATGATAAAGGTAGGTGAACAAAGTGGGAAACTGGCCGAGATGTTATTACA
AGTGAGTGAAATTTATCGCCAAAAATTAGAATATCAAATTGACTTACTTTCACAAATGCTAGAGCCGCTGTTAATGCTCG
TGATAGGATTCATTGTCGGCACTATTTTAATCGGTTTATATCTACCTATTTTTGATATGGGAGCAATGATTGAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
58.04 |
100 |
0.58 |
| pilC | Haemophilus influenzae Rd KW20 |
43.142 |
100 |
0.435 |
| pilC | Haemophilus influenzae 86-028NP |
42.394 |
100 |
0.427 |