Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LDO33_RS02155 Genome accession   NZ_OU594967
Coordinates   462941..464041 (+) Length   366 a.a.
NCBI ID   WP_131914321.1    Uniprot ID   A0A4R1J798
Organism   Celerinatantimonas diazotrophica isolate CEDIAZO1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 457941..469041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO33_RS02135 (CEDIAZO_00425) trkA 458507..459883 (-) 1377 WP_131914325.1 Trk system potassium transporter TrkA -
  LDO33_RS02140 (CEDIAZO_00426) rsmB 459950..461248 (-) 1299 WP_131914324.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LDO33_RS02145 (CEDIAZO_00427) fmt 461245..462198 (-) 954 WP_131914323.1 methionyl-tRNA formyltransferase -
  LDO33_RS02150 (CEDIAZO_00428) def 462221..462739 (-) 519 WP_131914322.1 peptide deformylase -
  LDO33_RS02155 (CEDIAZO_00429) dprA 462941..464041 (+) 1101 WP_131914321.1 DNA-processing protein DprA Machinery gene
  LDO33_RS02160 (CEDIAZO_00430) - 464041..464514 (+) 474 WP_131914320.1 DUF494 family protein -
  LDO33_RS02165 (CEDIAZO_00431) - 464575..465165 (+) 591 WP_131914319.1 type I DNA topoisomerase -
  LDO33_RS02170 (CEDIAZO_00432) - 465162..466295 (-) 1134 WP_131914318.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LDO33_RS02175 (CEDIAZO_00433) purE 466298..466783 (-) 486 WP_131914317.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  LDO33_RS02180 (CEDIAZO_00434) - 467061..467615 (+) 555 WP_131914316.1 L-threonylcarbamoyladenylate synthase -
  LDO33_RS02185 (CEDIAZO_00435) hemF 467631..468551 (+) 921 WP_131914315.1 oxygen-dependent coproporphyrinogen oxidase -
  LDO33_RS02190 (CEDIAZO_00436) maoP 468679..469035 (+) 357 WP_131914314.1 DUF413 domain-containing protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39308.06 Da        Isoelectric Point: 6.1699

>NTDB_id=1151321 LDO33_RS02155 WP_131914321.1 462941..464041(+) (dprA) [Celerinatantimonas diazotrophica isolate CEDIAZO1]
MNDSNSSDVILRLSAVPGIGPKKLSKLLSHLDMDDLDQLDSERLGKYGFNSRQIQAYLVGCLELEKARRWQQASCNHHIV
TLADSTYPMRLKQIVAPPPVLFVVGSVDCLCQLQIAIVGSRQAGVVAKQQVSHIAAQLAECGIVITSGLALGIDGAAHQG
ALEKGRTIAVMGTGCDRIYPARHRHLAQQISEAGALVSEFFPGTAANAQHFPRRNRVISALSVGVVVSEAALKSGSLITA
HYALEQNRELFAIPGNIDNPLTEGPHRLIQDGAKLITSAADILEEVIPISPDILDKTALPSDNSCQQQLPTGGLLDNVGY
ETTSIDQIVERSLLPVEQVVGELIELEMSGFIAVVPGGYVRLRRNP

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1151321 LDO33_RS02155 WP_131914321.1 462941..464041(+) (dprA) [Celerinatantimonas diazotrophica isolate CEDIAZO1]
ATGAATGATTCAAATAGTTCGGATGTTATTTTGCGCCTGAGTGCGGTGCCTGGAATCGGTCCGAAGAAACTATCTAAATT
ACTTAGTCATCTCGATATGGATGATCTTGACCAGCTGGATAGCGAGAGACTTGGCAAATATGGTTTTAACAGTCGGCAAA
TTCAAGCCTATTTAGTGGGCTGCTTGGAGCTTGAGAAAGCTCGTCGCTGGCAACAGGCCTCGTGCAACCATCATATTGTG
ACGCTTGCCGATTCGACTTATCCGATGCGTTTAAAACAGATAGTAGCACCGCCCCCTGTTTTATTTGTGGTTGGTTCAGT
TGACTGTCTTTGCCAGCTCCAAATTGCCATTGTTGGGAGTCGACAGGCCGGCGTGGTTGCCAAACAACAAGTGAGCCACA
TCGCTGCTCAGTTGGCGGAATGTGGGATAGTGATTACCAGTGGCTTGGCCTTGGGAATTGATGGCGCAGCCCATCAGGGG
GCCCTTGAGAAAGGACGCACGATTGCTGTGATGGGGACCGGATGTGATCGTATATATCCGGCCCGGCATCGCCATCTGGC
ACAACAAATTAGTGAGGCCGGGGCGCTGGTGAGTGAGTTTTTCCCGGGAACTGCTGCCAATGCGCAGCACTTTCCACGGC
GTAATCGGGTGATTAGTGCTTTAAGTGTCGGCGTTGTGGTCTCTGAAGCGGCACTTAAAAGTGGCTCTCTGATTACTGCC
CATTATGCGCTGGAACAAAATCGCGAACTATTTGCTATTCCTGGAAATATAGACAACCCTTTAACTGAGGGGCCTCATCG
ATTAATTCAAGATGGGGCTAAACTCATCACGTCAGCAGCCGATATCTTAGAAGAGGTGATTCCGATTTCACCAGATATTT
TGGACAAAACGGCATTACCATCAGATAATAGTTGCCAACAACAATTGCCAACGGGTGGATTGTTGGATAACGTAGGTTAT
GAGACGACATCAATTGATCAAATTGTCGAGCGCAGCTTACTGCCCGTAGAACAAGTCGTCGGAGAACTGATTGAACTGGA
AATGTCTGGTTTTATTGCTGTTGTACCCGGCGGTTATGTCCGATTGAGGAGGAACCCGTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(309-358)

DNA recombination-mediator protein A (DNA_processg_A)

(76-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R1J798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

47.978

100

0.486
  dprA Glaesserella parasuis strain SC1401

43.164

100

0.44
  dprA Legionella pneumophila strain ERS1305867

44.444

98.361

0.437
  dprA Vibrio cholerae strain A1552

43.094

98.907

0.426
  dprA Haemophilus influenzae Rd KW20

43.605

93.989

0.41
  dprA Neisseria gonorrhoeae MS11

42.089

86.339

0.363
  dprA Neisseria meningitidis strain C311

41.562

87.432

0.363
  dprA Neisseria meningitidis MC58

41.562

87.432

0.363
  dprA Neisseria gonorrhoeae strain FA1090

41.772

86.339

0.361

Multiple sequence alignment