Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KJA91_RS13475 Genome accession   NZ_OD940420
Coordinates   2814074..2815318 (-) Length   414 a.a.
NCBI ID   WP_010712903.1    Uniprot ID   -
Organism   Enterococcus faecalis isolate WE0438     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2809074..2820318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJA91_RS13455 (WE0438_02751) - 2809544..2809930 (-) 387 WP_002359008.1 YlbF family regulator -
  KJA91_RS13460 (WE0438_02752) - 2810004..2810801 (-) 798 WP_002354864.1 TIGR00282 family metallophosphoesterase -
  KJA91_RS13465 (WE0438_02753) rny 2810961..2812517 (-) 1557 WP_002354863.1 ribonuclease Y -
  KJA91_RS13470 (WE0438_02754) recA 2812914..2813960 (-) 1047 WP_002354860.1 recombinase RecA Machinery gene
  KJA91_RS13475 (WE0438_02755) cinA 2814074..2815318 (-) 1245 WP_010712903.1 competence/damage-inducible protein A Machinery gene
  KJA91_RS13480 (WE0438_02756) - 2815510..2816709 (+) 1200 WP_002415623.1 hypothetical protein -
  KJA91_RS13485 (WE0438_02757) - 2816789..2817418 (-) 630 WP_002415622.1 NAD(P)-dependent oxidoreductase -
  KJA91_RS13490 (WE0438_02758) - 2817477..2817902 (-) 426 WP_002383201.1 Rrf2 family transcriptional regulator -
  KJA91_RS13495 (WE0438_02759) - 2817991..2818374 (-) 384 WP_010712905.1 YccF domain-containing protein -
  KJA91_RS13500 (WE0438_02760) - 2818538..2819329 (+) 792 WP_002415619.1 hypothetical protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45221.34 Da        Isoelectric Point: 4.6698

>NTDB_id=1150592 KJA91_RS13475 WP_010712903.1 2814074..2815318(-) (cinA) [Enterococcus faecalis isolate WE0438]
MKAEIIAVGTELLLGQVVNTNATFLSEELAALGIDVYYQTVVGDNGGRLETLLTEAEQRSDLIVLCGGLGPTEDDLTKQV
VAQHLHKSLVEDQEGLNRLHQFFQQSKRPMTENNLRQVLAIEGGQVLQNPTGLAVGSFVTEGTTSYLLLPGPPNELIPMF
QQAARPLLIDAFPQEEQLISRVLRFYGIGESQLVTEIQSLIVHQTNPTIAPYAKPNEVTLRLTVKTKDLVAGEELLTATE
EKVLAKVGDYFYGYGDDNSLAKVTVDLLLQNGQTVTAAESLTAGLFQSTLGEIAGASKIFKGGFVTYSQETKENFLGISH
ELLEEHGTVSEACAKEMAEKARQLAKSNYGLSFTGVAGDPIEGQPTGTVWIGLAEEGQPTVAECFHFNRDRNYIRQSAVM
RGLDLLRRRIINKK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1150592 KJA91_RS13475 WP_010712903.1 2814074..2815318(-) (cinA) [Enterococcus faecalis isolate WE0438]
ATGAAAGCAGAGATCATTGCAGTCGGAACAGAGTTATTACTGGGACAAGTAGTGAATACCAACGCCACCTTTTTATCAGA
AGAGTTAGCTGCGCTAGGCATCGATGTTTACTATCAGACCGTTGTTGGAGATAACGGCGGCCGCTTAGAAACGCTACTAA
CAGAAGCAGAACAAAGAAGTGATTTAATTGTCCTATGTGGAGGGCTAGGACCTACAGAAGACGATTTAACCAAGCAAGTT
GTCGCACAACATCTCCATAAATCATTAGTAGAAGATCAAGAAGGATTGAACCGCTTGCACCAGTTTTTCCAACAGTCTAA
GCGGCCAATGACGGAAAATAATCTACGACAAGTGTTAGCCATTGAAGGTGGACAAGTTCTTCAAAACCCGACAGGATTAG
CGGTTGGTTCTTTCGTAACAGAAGGCACAACAAGCTATTTGCTCTTACCAGGACCACCCAATGAATTAATTCCGATGTTC
CAACAAGCGGCACGACCTTTATTGATTGATGCGTTTCCACAAGAAGAACAATTGATTTCAAGAGTCTTGCGTTTTTATGG
GATTGGTGAATCACAGCTGGTGACCGAGATTCAATCGTTGATTGTGCACCAAACGAATCCAACCATTGCGCCTTATGCTA
AGCCTAATGAAGTGACACTTCGTTTAACAGTTAAAACAAAAGACTTAGTAGCTGGCGAAGAATTATTAACAGCGACGGAA
GAAAAGGTTTTAGCTAAAGTGGGGGACTATTTTTATGGGTATGGGGATGACAATAGTTTAGCCAAGGTAACAGTGGATTT
GTTATTACAAAACGGACAAACCGTCACGGCTGCTGAGAGCCTCACTGCTGGCCTATTCCAAAGTACACTGGGGGAAATTG
CGGGTGCTTCGAAGATTTTTAAGGGAGGCTTCGTGACGTATTCGCAAGAAACAAAAGAGAACTTTTTAGGAATTTCTCAT
GAACTTTTAGAAGAGCATGGCACGGTAAGTGAAGCGTGTGCCAAAGAAATGGCAGAGAAAGCGCGTCAGTTAGCTAAATC
TAACTATGGTTTATCATTTACTGGGGTCGCTGGTGACCCAATCGAAGGCCAACCGACAGGCACTGTTTGGATTGGGCTGG
CGGAAGAAGGCCAACCAACCGTTGCAGAATGTTTCCATTTTAACCGTGACCGAAATTATATTAGACAGAGTGCGGTTATG
CGAGGATTAGATCTTTTGCGGCGCCGAATCATTAATAAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.537

100

0.527
  cinA Streptococcus mutans UA159

52.153

100

0.527
  cinA Streptococcus mitis NCTC 12261

51.3

100

0.524
  cinA Streptococcus pneumoniae TIGR4

50.591

100

0.517
  cinA Streptococcus pneumoniae D39

50.355

100

0.514
  cinA Streptococcus pneumoniae R6

50.118

100

0.512
  cinA Streptococcus pneumoniae Rx1

50.118

100

0.512
  cinA Bacillus subtilis subsp. subtilis str. 168

48.522

98.068

0.476
  cinA Streptococcus suis isolate S10

44.039

99.275

0.437

Multiple sequence alignment