Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | C6H38_RS24280 | Genome accession | NZ_LT963402 |
| Coordinates | 5093620..5094837 (+) | Length | 405 a.a. |
| NCBI ID | WP_060412773.1 | Uniprot ID | A0AB38EJA8 |
| Organism | Pseudomonas syringae pv. avii isolate CFBP3846 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5088620..5099837
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6H38_RS24265 (CFBP3846_04657) | - | 5089846..5091084 (-) | 1239 | WP_080395287.1 | O-antigen ligase family protein | - |
| C6H38_RS24270 | - | 5091314..5091697 (-) | 384 | WP_080395286.1 | pilin | - |
| C6H38_RS24275 (CFBP3846_04659) | pilB | 5091923..5093617 (+) | 1695 | WP_060412774.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| C6H38_RS24280 (CFBP3846_04660) | pilC | 5093620..5094837 (+) | 1218 | WP_060412773.1 | type II secretion system F family protein | Machinery gene |
| C6H38_RS24285 (CFBP3846_04661) | pilD | 5094839..5095711 (+) | 873 | WP_058417675.1 | prepilin peptidase | Machinery gene |
| C6H38_RS24290 (CFBP3846_04662) | coaE | 5095708..5096331 (+) | 624 | WP_057418267.1 | dephospho-CoA kinase | - |
| C6H38_RS24295 (CFBP3846_04663) | yacG | 5096328..5096537 (+) | 210 | WP_003381207.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44265.23 Da Isoelectric Point: 10.2061
>NTDB_id=1148827 C6H38_RS24280 WP_060412773.1 5093620..5094837(+) (pilC) [Pseudomonas syringae pv. avii isolate CFBP3846]
MASKAVKVSTYKWEGVDKKGGKLSGEVSGHNLALVKAQLRKQGINFTKVRKKPVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRKKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKT
ERLKAKIKKAMTYPTAVLIVAFIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVALFFVSFFMFK
RAYKQSQKFRDSLDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVNQVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDNMTSLMEPMIMAILGVIVGGLVIAMYLPIFK
LGSVV
MASKAVKVSTYKWEGVDKKGGKLSGEVSGHNLALVKAQLRKQGINFTKVRKKPVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRKKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKT
ERLKAKIKKAMTYPTAVLIVAFIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVALFFVSFFMFK
RAYKQSQKFRDSLDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVNQVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDNMTSLMEPMIMAILGVIVGGLVIAMYLPIFK
LGSVV
Nucleotide
Download Length: 1218 bp
>NTDB_id=1148827 C6H38_RS24280 WP_060412773.1 5093620..5094837(+) (pilC) [Pseudomonas syringae pv. avii isolate CFBP3846]
ATGGCCAGCAAGGCAGTTAAAGTCAGTACTTACAAATGGGAAGGTGTGGACAAGAAAGGCGGCAAACTCAGTGGAGAAGT
GAGCGGGCACAACCTCGCGCTCGTGAAGGCTCAGTTACGCAAGCAAGGAATCAATTTCACCAAGGTACGTAAAAAGCCCG
TATCGATTTTTGGCAAAGGTAAGAAGATCAAGCCGCTGGACATCGCATTCTTTTCCCGGCAGATGGCTACCATGATGAAG
GCAGGTGTGCCACTGCTGCAGTCATTTGACATCATTGCCGAGGGTGCAGAAAACCCGAACATGCGTGCGCTGGTCGGCTC
TCTAAAGCAGGAGGTTTCAGCAGGGAACAGCTTTGCGACGGCTCTGCGAAAGAAACCGGAATATTTCGACGACCTGTTCT
GCAACCTAGTCGATGCAGGTGAGCAAGCGGGGGCGCTCGAAAGCCTGCTGGACCGCGTGGCGAGCTACAAGGAAAAGACG
GAAAGGCTAAAGGCCAAAATCAAGAAGGCGATGACTTATCCTACCGCAGTATTAATTGTTGCTTTTATCGTGTCAGGCAT
TTTGCTGATTAAGGTCGTTCCGCAGTTCCAGTCTGTTTTCGCTGGTTTTAACGCAGAATTACCAGCATTCACGCTGATGG
TCATTGCCCTTTCGGAAGTCGTTCAACAGTGGTGGCTGGCAATAGTTGCGTTATTTTTTGTCAGCTTTTTCATGTTCAAG
CGGGCTTACAAACAGTCTCAAAAGTTTCGTGACAGCCTCGACCGCTTCCTTCTGAAAGTCCCCATTATCGGACCACTGAT
TTTCAAGTCGTCCGTCGCGCGCTATGCGCGGACCCTTGCGACAACCTTTGCCGCAGGTGTCCCGCTGGTGGAGGCACTTG
ATTCGGTCGCCGGCGCCACCGGTAACGTCGTATTCAGGAACGCAGTCAACCAGGTCAAACAGGATGTTTCCACGGGTATG
CAATTAAATTTCTCGATGCGTTCAACAGGTGTATTTCCAAGTCTGGCGATACAAATGACAGCAATCGGCGAAGAGTCCGG
TGCGCTTGATGCCATGCTCGATAAAGTCGCGACCTACTATGAAGAAGAAGTCGACAACATGGTCGACAATATGACCAGCC
TGATGGAACCGATGATCATGGCGATACTGGGTGTCATCGTCGGCGGCCTGGTTATCGCCATGTACCTCCCCATCTTCAAA
CTTGGAAGCGTCGTCTGA
ATGGCCAGCAAGGCAGTTAAAGTCAGTACTTACAAATGGGAAGGTGTGGACAAGAAAGGCGGCAAACTCAGTGGAGAAGT
GAGCGGGCACAACCTCGCGCTCGTGAAGGCTCAGTTACGCAAGCAAGGAATCAATTTCACCAAGGTACGTAAAAAGCCCG
TATCGATTTTTGGCAAAGGTAAGAAGATCAAGCCGCTGGACATCGCATTCTTTTCCCGGCAGATGGCTACCATGATGAAG
GCAGGTGTGCCACTGCTGCAGTCATTTGACATCATTGCCGAGGGTGCAGAAAACCCGAACATGCGTGCGCTGGTCGGCTC
TCTAAAGCAGGAGGTTTCAGCAGGGAACAGCTTTGCGACGGCTCTGCGAAAGAAACCGGAATATTTCGACGACCTGTTCT
GCAACCTAGTCGATGCAGGTGAGCAAGCGGGGGCGCTCGAAAGCCTGCTGGACCGCGTGGCGAGCTACAAGGAAAAGACG
GAAAGGCTAAAGGCCAAAATCAAGAAGGCGATGACTTATCCTACCGCAGTATTAATTGTTGCTTTTATCGTGTCAGGCAT
TTTGCTGATTAAGGTCGTTCCGCAGTTCCAGTCTGTTTTCGCTGGTTTTAACGCAGAATTACCAGCATTCACGCTGATGG
TCATTGCCCTTTCGGAAGTCGTTCAACAGTGGTGGCTGGCAATAGTTGCGTTATTTTTTGTCAGCTTTTTCATGTTCAAG
CGGGCTTACAAACAGTCTCAAAAGTTTCGTGACAGCCTCGACCGCTTCCTTCTGAAAGTCCCCATTATCGGACCACTGAT
TTTCAAGTCGTCCGTCGCGCGCTATGCGCGGACCCTTGCGACAACCTTTGCCGCAGGTGTCCCGCTGGTGGAGGCACTTG
ATTCGGTCGCCGGCGCCACCGGTAACGTCGTATTCAGGAACGCAGTCAACCAGGTCAAACAGGATGTTTCCACGGGTATG
CAATTAAATTTCTCGATGCGTTCAACAGGTGTATTTCCAAGTCTGGCGATACAAATGACAGCAATCGGCGAAGAGTCCGG
TGCGCTTGATGCCATGCTCGATAAAGTCGCGACCTACTATGAAGAAGAAGTCGACAACATGGTCGACAATATGACCAGCC
TGATGGAACCGATGATCATGGCGATACTGGGTGTCATCGTCGGCGGCCTGGTTATCGCCATGTACCTCCCCATCTTCAAA
CTTGGAAGCGTCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
73.086 |
100 |
0.731 |
| pilC | Acinetobacter baylyi ADP1 |
59.314 |
100 |
0.598 |
| pilC | Acinetobacter baumannii D1279779 |
59.406 |
99.753 |
0.593 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.897 |
98.025 |
0.519 |
| pilG | Neisseria gonorrhoeae MS11 |
42.68 |
99.506 |
0.425 |
| pilG | Neisseria meningitidis 44/76-A |
42.68 |
99.506 |
0.425 |
| pilC | Vibrio campbellii strain DS40M4 |
41.769 |
100 |
0.42 |
| pilC | Vibrio cholerae strain A1552 |
41.481 |
100 |
0.415 |
| pilC | Thermus thermophilus HB27 |
37.905 |
99.012 |
0.375 |