Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   CKV83_RS09890 Genome accession   NZ_LT906439
Coordinates   2102175..2104151 (+) Length   658 a.a.
NCBI ID   WP_018373618.1    Uniprot ID   A0A239SZ45
Organism   Streptococcus merionis strain NCTC13788     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2097175..2109151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS09880 (SAMEA4412692_01974) - 2098338..2099627 (-) 1290 WP_026216944.1 serine hydrolase -
  CKV83_RS09885 (SAMEA4412692_01975) amiA 2099832..2101814 (+) 1983 WP_018373619.1 peptide ABC transporter substrate-binding protein Regulator
  CKV83_RS09890 (SAMEA4412692_01976) amiA 2102175..2104151 (+) 1977 WP_018373618.1 peptide ABC transporter substrate-binding protein Regulator
  CKV83_RS09895 (SAMEA4412692_01977) amiC 2104228..2105733 (+) 1506 WP_018373617.1 ABC transporter permease Regulator
  CKV83_RS09900 (SAMEA4412692_01978) amiD 2105733..2106659 (+) 927 WP_018373616.1 oligopeptide ABC transporter permease OppC Regulator
  CKV83_RS09905 (SAMEA4412692_01979) amiE 2106669..2107724 (+) 1056 WP_018373615.1 ABC transporter ATP-binding protein Regulator
  CKV83_RS09910 (SAMEA4412692_01980) amiF 2107735..2108655 (+) 921 WP_018373614.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71974.36 Da        Isoelectric Point: 4.2870

>NTDB_id=1147155 CKV83_RS09890 WP_018373618.1 2102175..2104151(+) (amiA) [Streptococcus merionis strain NCTC13788]
MQKRKMIALAGISLLAAGALAACGGKSSGGSSENSTYSYVYTTDPESLNYLLTNKTSTSEITSNLVDGLLENDKYGNLVP
SLAEDWKVSKDGLTYTYTLRKDAKWYTVDGEEYADVTAQDFVAGLKYAAENEASALYIVQNSIKGLDAYVKGETTDFSTV
GVKAVDDHTVQYTLNQAEPFWNSKTTMNILFPVNQEFLTAQGDKFGTATDPSTLLYNGPYLISAMTPKSSIEYTKNENYW
DAENVKINEVKLTYYDGSDSDSLYKGFDEGAYTMARVFPNSSIYSDVKEKYGDNIVFSQQDSTTFYGLFNLDRQNYANTS
KTEEQKSDTKAAILNKDFRQAVTFAFDRVSFNAQSVGKDGAEAKVRTSLVPSTFVSVDGTNFGDVVEKELVSYGSEWADV
QLDDGKDGLYNVEKAKAEFAKAKEALTAEGVTFPIHLDVPTLQSNEVLVASAQSFKDSIESTLGKDNVTIDLQMLDEDAY
NAASYFAENASQLNYDISISTGWGPDFEDPSTYLDIFDSSIKGSHSYVIGVDGGSDSAAAKTVGLNTYNDLLAKASSETA
DITARYTNYAKAQAWLVDASIIIPYNSGGATPSLRKIVPFTDAYGTVGNKHYPLTYKGLELQAESVVAKDYEAARQKWLD
EKAESNKKAQEALADHVE

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1147155 CKV83_RS09890 WP_018373618.1 2102175..2104151(+) (amiA) [Streptococcus merionis strain NCTC13788]
ATGCAAAAAAGAAAAATGATAGCTTTAGCAGGGATCTCTCTGCTAGCAGCAGGTGCTTTGGCAGCGTGCGGTGGGAAGTC
TAGTGGCGGAAGTTCCGAAAACTCAACTTATTCTTACGTGTATACTACTGACCCAGAGTCTCTTAACTACCTTTTAACAA
ATAAAACGTCAACATCCGAAATCACTTCAAACTTGGTCGATGGTTTGCTTGAAAACGACAAATACGGTAACTTGGTACCA
TCTCTTGCGGAAGACTGGAAAGTATCTAAAGATGGCTTGACCTACACTTACACTCTTCGTAAAGATGCGAAGTGGTATAC
AGTTGATGGGGAAGAGTATGCAGATGTGACCGCTCAAGACTTTGTGGCTGGTCTCAAGTATGCTGCTGAAAATGAAGCAA
GCGCCCTTTACATTGTTCAAAATTCGATCAAAGGGTTAGATGCTTACGTTAAGGGAGAGACAACGGACTTTTCAACAGTG
GGTGTGAAAGCTGTCGATGATCATACGGTTCAATACACCTTGAACCAAGCAGAGCCATTCTGGAATTCTAAGACGACCAT
GAACATCCTCTTCCCGGTTAACCAAGAGTTCTTGACAGCTCAAGGCGATAAGTTTGGAACAGCGACTGATCCGTCAACGC
TTCTTTATAATGGACCATACCTTATTTCTGCGATGACACCGAAGTCTTCAATCGAGTATACGAAAAATGAAAACTATTGG
GATGCAGAAAATGTTAAAATCAACGAAGTGAAGTTGACTTACTATGATGGTTCGGACTCTGACTCCCTTTACAAAGGGTT
TGATGAAGGTGCTTATACAATGGCACGTGTTTTCCCTAACTCATCTATCTATTCTGATGTGAAGGAAAAATATGGCGATA
ACATCGTTTTCAGTCAACAAGATTCTACGACTTTCTATGGTCTCTTTAACCTAGATCGTCAAAATTATGCCAATACCTCT
AAAACAGAAGAGCAAAAATCAGATACCAAGGCGGCTATCTTAAACAAAGACTTCCGACAAGCGGTAACTTTTGCTTTTGA
CCGTGTATCCTTCAACGCCCAAAGTGTTGGTAAAGACGGTGCTGAAGCGAAGGTTCGTACTTCACTTGTGCCATCTACCT
TTGTCTCTGTTGATGGGACAAACTTTGGTGATGTTGTCGAAAAAGAATTAGTCAGCTACGGTTCTGAATGGGCGGATGTT
CAATTAGATGACGGTAAAGATGGTCTTTACAATGTTGAAAAGGCAAAGGCAGAGTTTGCGAAAGCAAAAGAAGCTCTTAC
AGCTGAAGGTGTCACCTTCCCGATTCATTTGGATGTTCCGACCTTACAATCTAACGAAGTATTAGTGGCATCAGCTCAAT
CGTTCAAAGATTCTATCGAGTCTACGCTAGGCAAGGATAACGTTACAATTGACTTGCAGATGCTAGATGAAGATGCTTAC
AATGCTGCTTCTTATTTTGCAGAAAATGCAAGCCAGTTGAACTATGATATTTCGATTTCCACTGGTTGGGGTCCTGACTT
TGAAGACCCATCAACATATCTGGATATCTTTGACAGCTCTATTAAGGGATCTCATTCGTATGTTATCGGTGTTGATGGAG
GTTCAGACAGTGCAGCTGCTAAGACAGTTGGACTTAACACTTATAACGACCTTCTTGCCAAGGCTTCAAGCGAGACAGCA
GATATCACAGCGCGCTACACCAACTATGCTAAAGCACAAGCTTGGTTAGTAGATGCTTCTATTATCATTCCTTATAACTC
TGGTGGTGCGACACCATCACTCCGTAAGATAGTGCCATTTACAGATGCTTATGGCACAGTTGGGAACAAGCATTATCCAC
TGACTTACAAAGGTTTAGAGTTGCAAGCAGAATCTGTCGTGGCTAAAGACTACGAAGCAGCACGTCAAAAGTGGTTGGAC
GAGAAAGCAGAGTCTAACAAAAAAGCTCAGGAAGCGCTGGCTGACCACGTAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239SZ45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.788

100

0.54
  amiA3 Streptococcus thermophilus LMD-9

53.404

100

0.536
  amiA3 Streptococcus thermophilus LMG 18311

53.101

100

0.533

Multiple sequence alignment