Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   CKV83_RS09885 Genome accession   NZ_LT906439
Coordinates   2099832..2101814 (+) Length   660 a.a.
NCBI ID   WP_018373619.1    Uniprot ID   A0A239T0X3
Organism   Streptococcus merionis strain NCTC13788     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2094832..2106814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS09870 (SAMEA4412692_01972) - 2095726..2096493 (+) 768 WP_018373622.1 ABC transporter ATP-binding protein -
  CKV83_RS09875 (SAMEA4412692_01973) - 2096483..2098111 (+) 1629 WP_018373621.1 hypothetical protein -
  CKV83_RS09880 (SAMEA4412692_01974) - 2098338..2099627 (-) 1290 WP_026216944.1 serine hydrolase -
  CKV83_RS09885 (SAMEA4412692_01975) amiA 2099832..2101814 (+) 1983 WP_018373619.1 peptide ABC transporter substrate-binding protein Regulator
  CKV83_RS09890 (SAMEA4412692_01976) amiA 2102175..2104151 (+) 1977 WP_018373618.1 peptide ABC transporter substrate-binding protein Regulator
  CKV83_RS09895 (SAMEA4412692_01977) amiC 2104228..2105733 (+) 1506 WP_018373617.1 ABC transporter permease Regulator
  CKV83_RS09900 (SAMEA4412692_01978) amiD 2105733..2106659 (+) 927 WP_018373616.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73179.85 Da        Isoelectric Point: 4.3277

>NTDB_id=1147154 CKV83_RS09885 WP_018373619.1 2099832..2101814(+) (amiA) [Streptococcus merionis strain NCTC13788]
MKTKKWLALAGVTLLTVGALAACGGGSSKSSSGDTNNDTYSYVYGTDPETLDYLVDNHSTTSEIVTNLVDGLLENDQYGN
FVPSIAEDWTVSKDGLTYTYKLRKDAKWFTSDGEEYADVTAHDFVAGVKYAADKNSSALYIIQNSIKGLDAYIKGETSDF
STVGVKAIDDHTVEYTLNAPEPFWNSKTTMGILFPVNEEFLKSQGDKFGIPTDPSTLLYNGAYLLSAITAKSSVEFTKNE
NYWDADKVSIENIKLTYDDGSNPENFIKNFTDGNYTMARVYPNTSSYSSVKEQYKDNIVYSQPGSATYYAMMNMGRTKYD
HTSKTTDEEKASTKAALQNKDFRQAISFAFDRKTFNAQSVGEDGAEKGIRNMVVPADFVTVGEKDFASLVEEQIVSYGSE
WENVQLDDAQDGIYNVEKAKAEFAKAKEALEKEGVKFPIKLDVPIDQANTVRVQQAQSLKKSIEDALGSENVQIDLQMLD
EDAYLAATYYANNADQTDYDMSIASGWAPDFQDPSTYLDIFDTSKEGTMTYTIGINGGTNSEVAKKVGFDDYNALLAEAS
KETDLEKRYTTYAKAQAWLVDESVVIPYVSNYATPGVRKTVPFSVSYAAVGAKDDRFFKYLKLQDETVTVEQYDKAYETW
KEEKAKSNAEAEKALADHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1147154 CKV83_RS09885 WP_018373619.1 2099832..2101814(+) (amiA) [Streptococcus merionis strain NCTC13788]
ATGAAAACGAAAAAATGGCTTGCTCTAGCTGGGGTCACACTTTTGACGGTAGGTGCTCTTGCTGCATGTGGCGGGGGATC
ATCTAAGTCATCATCTGGTGATACAAATAATGACACGTATTCTTACGTTTACGGAACAGACCCAGAAACCTTGGATTACT
TGGTTGATAATCATTCAACCACTTCTGAGATCGTGACGAACTTGGTTGACGGTCTTTTGGAAAACGACCAGTACGGGAAC
TTTGTCCCATCTATAGCTGAAGACTGGACTGTCTCTAAGGATGGTTTGACTTACACTTACAAACTCCGCAAAGATGCGAA
GTGGTTCACTTCTGATGGTGAAGAATACGCAGATGTAACAGCTCACGACTTTGTGGCAGGTGTTAAATACGCAGCAGATA
AGAATTCTTCAGCGCTTTACATCATTCAAAATTCTATCAAGGGCTTGGATGCCTATATTAAAGGCGAGACAAGTGATTTC
TCGACAGTTGGTGTGAAAGCGATTGATGATCACACCGTTGAGTACACTCTGAATGCTCCAGAGCCATTTTGGAATTCTAA
GACAACCATGGGGATTCTCTTCCCGGTTAATGAAGAGTTTTTGAAGAGCCAAGGCGACAAGTTTGGGATACCAACAGATC
CATCAACCCTCCTTTACAATGGTGCCTACCTCCTTTCAGCTATTACAGCCAAATCCTCTGTTGAATTTACGAAAAATGAA
AACTATTGGGATGCTGACAAGGTTAGTATTGAGAACATCAAGTTGACATATGATGATGGGTCAAATCCGGAAAACTTTAT
TAAAAACTTTACAGATGGAAACTACACAATGGCGCGTGTCTATCCAAACACGTCAAGCTATTCAAGTGTTAAAGAGCAGT
ATAAAGATAATATTGTATACAGTCAGCCTGGTTCAGCAACTTACTATGCGATGATGAACATGGGACGTACTAAGTATGAC
CACACATCTAAGACGACTGATGAGGAGAAGGCATCTACGAAAGCAGCTCTTCAAAACAAGGACTTCCGCCAAGCAATTTC
CTTTGCCTTTGACCGCAAGACCTTCAATGCTCAGAGTGTTGGTGAAGACGGAGCTGAAAAAGGTATCCGTAATATGGTAG
TACCAGCAGACTTTGTGACTGTGGGCGAAAAAGATTTTGCCAGCCTTGTAGAGGAACAAATCGTGTCTTACGGCTCTGAG
TGGGAAAATGTCCAACTTGATGATGCGCAAGATGGTATCTACAATGTCGAAAAAGCTAAAGCTGAATTTGCCAAGGCCAA
AGAAGCCCTCGAAAAAGAAGGGGTTAAATTCCCAATCAAACTGGATGTCCCAATTGATCAAGCAAACACTGTCCGTGTAC
AACAAGCTCAGTCCCTTAAGAAATCAATCGAGGATGCTTTGGGATCAGAAAATGTCCAAATCGATCTTCAAATGTTAGAT
GAAGATGCTTACCTTGCTGCAACTTACTACGCTAATAACGCAGACCAAACCGATTACGATATGTCTATCGCATCTGGTTG
GGCGCCTGATTTCCAAGACCCATCGACCTACCTTGACATCTTTGACACCTCTAAGGAAGGGACCATGACTTATACCATTG
GTATTAATGGTGGCACCAACAGCGAAGTTGCTAAGAAGGTTGGTTTTGATGATTACAATGCCCTCCTTGCAGAAGCGTCA
AAAGAAACTGACTTGGAAAAACGCTACACAACCTATGCGAAAGCACAGGCTTGGTTAGTGGACGAGTCAGTGGTTATCCC
TTATGTGTCGAACTATGCAACTCCAGGTGTTCGTAAGACAGTTCCATTCTCTGTTTCTTATGCAGCAGTTGGTGCGAAAG
ACGATAGGTTTTTCAAATATTTGAAACTGCAAGACGAGACTGTGACGGTTGAGCAGTATGATAAGGCTTACGAAACTTGG
AAAGAAGAAAAAGCCAAATCAAATGCTGAAGCTGAAAAAGCACTGGCAGATCACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(81-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239T0X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.422

100

0.558
  amiA3 Streptococcus thermophilus LMD-9

54.217

100

0.545
  amiA3 Streptococcus thermophilus LMG 18311

53.765

100

0.541

Multiple sequence alignment