Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   CKV83_RS09895 Genome accession   NZ_LT906439
Coordinates   2104228..2105733 (+) Length   501 a.a.
NCBI ID   WP_018373617.1    Uniprot ID   A0A239T1C9
Organism   Streptococcus merionis strain NCTC13788     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2099228..2110733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS09885 (SAMEA4412692_01975) amiA 2099832..2101814 (+) 1983 WP_018373619.1 peptide ABC transporter substrate-binding protein Regulator
  CKV83_RS09890 (SAMEA4412692_01976) amiA 2102175..2104151 (+) 1977 WP_018373618.1 peptide ABC transporter substrate-binding protein Regulator
  CKV83_RS09895 (SAMEA4412692_01977) amiC 2104228..2105733 (+) 1506 WP_018373617.1 ABC transporter permease Regulator
  CKV83_RS09900 (SAMEA4412692_01978) amiD 2105733..2106659 (+) 927 WP_018373616.1 oligopeptide ABC transporter permease OppC Regulator
  CKV83_RS09905 (SAMEA4412692_01979) amiE 2106669..2107724 (+) 1056 WP_018373615.1 ABC transporter ATP-binding protein Regulator
  CKV83_RS09910 (SAMEA4412692_01980) amiF 2107735..2108655 (+) 921 WP_018373614.1 ATP-binding cassette domain-containing protein Regulator
  CKV83_RS09915 (SAMEA4412692_01981) - 2109059..2110366 (+) 1308 WP_018373613.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 55735.54 Da        Isoelectric Point: 9.9186

>NTDB_id=1147156 CKV83_RS09895 WP_018373617.1 2104228..2105733(+) (amiC) [Streptococcus merionis strain NCTC13788]
MKKYIFNRILRSLVSIFLVTTLIYTIVYTLVPRRQIFKNDTNYTKMTKTPDMKADYENTIFERMGYIDYYNSRELRAKAS
EFDASVTVEGTSENKAIYEEYIKQLGNGWTLHQFQDSKQFYATRDVPVYQRVFEFYGNLFVIDHPWKVKDASNPDLKRGL
SIENDPSVGWSVVGSGTKHKYLLYFNSKFPFIHQNFITMDLGTSYPTYQNLPVLQVITQGQGKKAMTEVTFPSGSTKSSS
VDIYTRTYRSPEKADSQTIANFGKGDAYTATKTNYADPSMIVNSSIIGIVGVAIGYLLGLPLAVLMARYKGLRFDSISTG
VLTFLMAMPSVATAYIVRTIGSSFFGLPNAFPILGASDPRSYVLPALILGILQTPGLAVWARRYLIDQQSSDYVRFARAK
GLSEKEISYKHIFKNAMVPIVAGVPGAIVSVIVGATLTESLFAFPGMGKMMIDSVKASNSSMVVGLTFIFSSLSIFAVMA
GDILMTVIDPRIKLTTKKGGK

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=1147156 CKV83_RS09895 WP_018373617.1 2104228..2105733(+) (amiC) [Streptococcus merionis strain NCTC13788]
ATGAAGAAATACATTTTTAATCGTATTTTGCGTTCCTTGGTGTCTATCTTCTTGGTGACAACCCTGATCTATACCATCGT
CTATACGCTGGTACCAAGAAGACAGATTTTCAAGAATGACACAAACTACACAAAAATGACCAAAACCCCAGACATGAAGG
CGGACTATGAAAACACCATCTTCGAGCGTATGGGCTATATTGATTACTATAATTCGAGGGAGCTGCGCGCGAAAGCCAGT
GAGTTTGACGCTTCTGTCACAGTTGAAGGCACAAGCGAAAACAAGGCTATCTACGAAGAGTATATCAAGCAACTTGGCAA
TGGATGGACACTGCACCAATTTCAGGACTCTAAGCAATTTTATGCAACGCGCGATGTTCCTGTTTACCAGCGCGTGTTTG
AGTTTTACGGTAATTTATTTGTCATTGACCATCCTTGGAAAGTCAAGGATGCTAGCAACCCAGATTTGAAGCGTGGTCTT
TCTATTGAAAACGATCCTTCTGTAGGCTGGTCTGTTGTTGGTTCAGGTACTAAACACAAATATCTTCTATACTTCAACTC
CAAGTTCCCGTTCATTCATCAGAATTTCATCACAATGGATCTAGGAACATCTTACCCGACTTATCAAAACCTGCCAGTAT
TGCAGGTTATTACCCAAGGGCAAGGTAAGAAAGCGATGACTGAAGTAACCTTCCCTTCAGGTTCTACCAAATCTAGCTCA
GTGGATATCTATACACGGACATACCGCTCGCCAGAAAAAGCAGACTCTCAGACAATTGCCAACTTTGGTAAGGGAGATGC
CTATACAGCGACCAAGACCAACTACGCAGACCCATCGATGATTGTCAACTCGTCTATTATTGGGATTGTCGGTGTTGCAA
TCGGTTATCTTCTAGGCTTGCCGCTCGCGGTGTTGATGGCTCGTTATAAAGGGCTGCGTTTTGATAGCATCTCGACTGGT
GTACTGACATTCTTGATGGCTATGCCATCGGTTGCGACAGCTTATATCGTTCGGACTATTGGTTCGTCCTTCTTTGGATT
GCCAAATGCTTTTCCTATTTTAGGAGCCTCTGATCCAAGATCCTATGTCTTGCCAGCGCTCATTCTTGGTATTTTGCAAA
CACCAGGTCTAGCGGTTTGGGCACGTCGTTACTTGATTGACCAACAATCTAGTGACTATGTCCGTTTTGCGCGTGCAAAA
GGTTTATCAGAAAAAGAAATTTCATACAAGCATATCTTTAAAAATGCTATGGTACCAATTGTAGCAGGTGTGCCTGGTGC
TATTGTTAGTGTTATTGTTGGAGCAACCTTGACAGAATCGCTATTTGCCTTTCCTGGTATGGGTAAGATGATGATTGACT
CTGTTAAGGCATCTAACAGTTCTATGGTTGTTGGTCTGACATTTATCTTTAGTAGTTTATCCATCTTTGCTGTCATGGCA
GGTGATATTCTCATGACCGTTATTGACCCACGTATTAAATTGACGACTAAGAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239T1C9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

65.269

100

0.653
  amiC Streptococcus thermophilus LMG 18311

64.671

100

0.647
  amiC Streptococcus thermophilus LMD-9

64.271

100

0.643

Multiple sequence alignment