Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   CKV83_RS09910 Genome accession   NZ_LT906439
Coordinates   2107735..2108655 (+) Length   306 a.a.
NCBI ID   WP_018373614.1    Uniprot ID   -
Organism   Streptococcus merionis strain NCTC13788     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2102735..2113655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS09895 (SAMEA4412692_01977) amiC 2104228..2105733 (+) 1506 WP_018373617.1 ABC transporter permease Regulator
  CKV83_RS09900 (SAMEA4412692_01978) amiD 2105733..2106659 (+) 927 WP_018373616.1 oligopeptide ABC transporter permease OppC Regulator
  CKV83_RS09905 (SAMEA4412692_01979) amiE 2106669..2107724 (+) 1056 WP_018373615.1 ABC transporter ATP-binding protein Regulator
  CKV83_RS09910 (SAMEA4412692_01980) amiF 2107735..2108655 (+) 921 WP_018373614.1 ATP-binding cassette domain-containing protein Regulator
  CKV83_RS09915 (SAMEA4412692_01981) - 2109059..2110366 (+) 1308 WP_018373613.1 ABC transporter substrate-binding protein -
  CKV83_RS09920 (SAMEA4412692_01982) - 2110426..2111304 (+) 879 WP_018373612.1 carbohydrate ABC transporter permease -
  CKV83_RS09925 (SAMEA4412692_01983) - 2111308..2112135 (+) 828 WP_018373611.1 carbohydrate ABC transporter permease -
  CKV83_RS09930 (SAMEA4412692_01984) - 2112153..2112746 (+) 594 WP_018373610.1 hypothetical protein -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34558.49 Da        Isoelectric Point: 5.6959

>NTDB_id=1147159 CKV83_RS09910 WP_018373614.1 2107735..2108655(+) (amiF) [Streptococcus merionis strain NCTC13788]
MTEKLVEIKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGEIIYDGQKINGKLSNE
QRKDVIRKIQMIFQDPAASLNDRATVDYIISEGLHNFKLYDNEEDRRNKVKDMINQVGLLEEHLTRYPHEFSGGQRQRIG
IARALIMEPELVIADEPISALDVSVRAQVLNLLKKLQAELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFR
NPIHPYTRSLLSAVPIPDPLLERDKELVVYDPDQHDYSTSKPYMAELRPGHFVWGNDAELANYRKA

Nucleotide


Download         Length: 921 bp        

>NTDB_id=1147159 CKV83_RS09910 WP_018373614.1 2107735..2108655(+) (amiF) [Streptococcus merionis strain NCTC13788]
ATGACTGAAAAATTAGTTGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAAAAAGAAATTTGTAGCAGTTAAAAA
TGCTAATTTTTTCATTAACAAGGGAGAAACATTTTCTCTTGTTGGTGAATCAGGTTCTGGAAAGACAACGATCGGTCGAG
CTATCATTGGTCTTAATGATACTAGTGCTGGAGAAATCATCTATGATGGTCAAAAAATCAATGGTAAGCTTTCCAATGAG
CAGCGCAAAGATGTGATTCGGAAAATCCAAATGATTTTCCAAGACCCTGCGGCCAGCTTGAACGACCGTGCAACGGTTGA
TTATATTATTTCGGAAGGGCTTCACAATTTCAAATTATACGATAATGAAGAAGACCGTCGAAATAAAGTTAAAGACATGA
TTAACCAAGTCGGTCTTCTAGAAGAGCACTTGACTCGTTATCCACATGAGTTTTCAGGTGGGCAACGTCAGCGTATTGGT
ATCGCTCGAGCCCTGATTATGGAACCTGAGTTGGTTATTGCGGACGAGCCAATTTCAGCTTTAGACGTTTCTGTTCGTGC
TCAGGTCTTGAATCTTCTGAAAAAATTACAGGCTGAGCTGGGATTGACCTACCTCTTTATTGCTCATGATCTCTCTGTCG
TTCGCTTTATTTCTGATCGTATTGCCGTTATCTATAAAGGTGTGATTGTTGAAGTAGCTGAAACCGAAGAACTCTTCAGA
AATCCGATCCATCCTTATACCCGTTCCTTGTTGTCTGCGGTGCCTATTCCTGATCCTTTATTAGAGCGTGATAAGGAATT
GGTCGTGTACGATCCAGACCAGCATGATTATAGCACATCAAAACCATATATGGCAGAGTTGCGTCCAGGCCACTTCGTCT
GGGGAAATGATGCAGAACTTGCAAATTATCGCAAAGCATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-283)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

82.951

99.673

0.827
  amiF Streptococcus thermophilus LMG 18311

81.967

99.673

0.817
  amiF Streptococcus thermophilus LMD-9

81.639

99.673

0.814

Multiple sequence alignment