Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   CKV83_RS09900 Genome accession   NZ_LT906439
Coordinates   2105733..2106659 (+) Length   308 a.a.
NCBI ID   WP_018373616.1    Uniprot ID   -
Organism   Streptococcus merionis strain NCTC13788     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2100733..2111659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS09890 (SAMEA4412692_01976) amiA 2102175..2104151 (+) 1977 WP_018373618.1 peptide ABC transporter substrate-binding protein Regulator
  CKV83_RS09895 (SAMEA4412692_01977) amiC 2104228..2105733 (+) 1506 WP_018373617.1 ABC transporter permease Regulator
  CKV83_RS09900 (SAMEA4412692_01978) amiD 2105733..2106659 (+) 927 WP_018373616.1 oligopeptide ABC transporter permease OppC Regulator
  CKV83_RS09905 (SAMEA4412692_01979) amiE 2106669..2107724 (+) 1056 WP_018373615.1 ABC transporter ATP-binding protein Regulator
  CKV83_RS09910 (SAMEA4412692_01980) amiF 2107735..2108655 (+) 921 WP_018373614.1 ATP-binding cassette domain-containing protein Regulator
  CKV83_RS09915 (SAMEA4412692_01981) - 2109059..2110366 (+) 1308 WP_018373613.1 ABC transporter substrate-binding protein -
  CKV83_RS09920 (SAMEA4412692_01982) - 2110426..2111304 (+) 879 WP_018373612.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34803.46 Da        Isoelectric Point: 9.4221

>NTDB_id=1147157 CKV83_RS09900 WP_018373616.1 2105733..2106659(+) (amiD) [Streptococcus merionis strain NCTC13788]
MSQIDKSKFEFVKRDDLASETIDTPSYSYWSSVFRQFFRKKSTIFMLGLLIVIVGMSFLYPIFSDYDFNDVSNINNFSAR
YNWPNAKFWFGTDANAHSLFDAVWFGARNSILISIISTFINMTLGVIVGGIWGVSKSFDRVMMEVYNVISNVPYLLIIIV
MTYAIGSGFWNLIFAMTLTGWMGTAYSIRVQILRYRDLEYNLASQTLGTPTHKIISKNLLPQLVSVIVTSVSQMLPGYIS
TEAFLSYFGLGLPVTVPSLGRLISKYSQNVTTNAYLFWIPLTVLVLVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1147157 CKV83_RS09900 WP_018373616.1 2105733..2106659(+) (amiD) [Streptococcus merionis strain NCTC13788]
ATGTCACAAATTGATAAAAGTAAATTTGAATTTGTCAAACGAGACGACCTTGCCTCTGAGACAATTGATACACCGAGTTA
CTCTTACTGGAGTTCTGTGTTTCGTCAGTTTTTCAGGAAAAAATCGACGATTTTCATGCTCGGTTTGCTGATTGTTATTG
TCGGCATGAGTTTCTTATATCCGATCTTTTCTGATTATGACTTTAATGATGTCAGCAACATCAATAATTTCTCAGCGCGA
TACAATTGGCCGAATGCAAAATTTTGGTTTGGTACGGATGCCAATGCACACTCCCTTTTTGATGCGGTGTGGTTTGGTGC
GCGTAACTCCATCTTGATTTCCATCATTTCCACGTTTATTAATATGACCTTGGGTGTTATTGTTGGTGGTATTTGGGGTG
TATCTAAATCCTTTGACCGAGTGATGATGGAAGTGTATAATGTCATTTCAAACGTACCTTATCTGCTTATCATCATTGTC
ATGACCTACGCCATCGGCTCTGGTTTTTGGAATTTGATTTTTGCCATGACCTTGACAGGTTGGATGGGGACAGCCTACAG
TATCCGTGTGCAGATCTTGCGTTACCGTGACTTGGAGTATAACTTAGCCAGTCAAACACTGGGAACTCCAACGCATAAGA
TTATTAGCAAGAACTTACTACCGCAATTGGTCTCAGTTATCGTGACTTCCGTTTCACAGATGTTGCCAGGCTACATCTCA
ACCGAAGCCTTCCTATCTTACTTCGGTCTTGGATTGCCAGTAACCGTTCCAAGTTTGGGGCGCTTGATTTCTAAGTATTC
CCAAAACGTTACCACCAATGCCTATCTGTTCTGGATTCCATTGACGGTTCTTGTTTTGGTTTCGTTGTCACTTTTCATCG
TTGGTCAAAACCTTGCAGATGCCAGCGATCCACGTACCCATAGATAA

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

74.026

100

0.74
  amiD Streptococcus thermophilus LMG 18311

73.701

100

0.737
  amiD Streptococcus thermophilus LMD-9

73.701

100

0.737

Multiple sequence alignment