Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CKV70_RS07090 Genome accession   NZ_LT906436
Coordinates   1382010..1383254 (+) Length   414 a.a.
NCBI ID   WP_003732285.1    Uniprot ID   -
Organism   Listeria monocytogenes strain NCTC10357     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1377010..1388254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV70_RS07070 (SAMEA44515918_01431) yfmH 1378184..1379470 (+) 1287 WP_014600815.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  CKV70_RS07075 (SAMEA44515918_01432) ymfI 1379562..1380293 (+) 732 WP_003723919.1 elongation factor P 5-aminopentanone reductase -
  CKV70_RS07080 (SAMEA44515918_01433) - 1380344..1381273 (+) 930 WP_003732284.1 helix-turn-helix domain-containing protein -
  CKV70_RS07085 (SAMEA44515918_01434) pgsA 1381363..1381941 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CKV70_RS07090 (SAMEA44515918_01435) cinA 1382010..1383254 (+) 1245 WP_003732285.1 competence/damage-inducible protein A Machinery gene
  CKV70_RS07095 (SAMEA44515918_01436) recA 1383527..1384573 (+) 1047 WP_003732286.1 recombinase RecA Machinery gene
  CKV70_RS07100 (SAMEA44515918_01437) rny 1384874..1386436 (+) 1563 WP_003721904.1 ribonuclease Y -
  CKV70_RS07105 (SAMEA44515918_01438) - 1386550..1387047 (+) 498 WP_010990112.1 GNAT family N-acetyltransferase -
  CKV70_RS07110 (SAMEA44515918_01439) - 1387053..1387856 (+) 804 WP_003732288.1 TIGR00282 family metallophosphoesterase -
  CKV70_RS07115 (SAMEA44515918_01440) - 1387873..1388235 (+) 363 WP_003744056.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45675.93 Da        Isoelectric Point: 4.8685

>NTDB_id=1146985 CKV70_RS07090 WP_003732285.1 1382010..1383254(+) (cinA) [Listeria monocytogenes strain NCTC10357]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILADHLQKQLVEDEYHMNKINEYFASRNRTMTENNKLQAVIIKDSVVLNNDYGFAAGMYLKENNHTYVLLPGPPSEMKPM
FTKYANPLLLSENGNQNILESKIMRFFGIGESQLAADLNDLIVNQVNPTIATYAGDNEVVVRITATAKTKEEASSLVKDT
EEEILRRDGTFLYGYGEVSLPELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGHETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1146985 CKV70_RS07090 WP_003732285.1 1382010..1383254(+) (cinA) [Listeria monocytogenes strain NCTC10357]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACTGAACTATTACTTGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACGGTAGTTGGAGATAATCCAACACGTTTAAAAGAAGTAA
TCGAAATTGCTGAAAAGCGCAGTGATATTTTAATCTTTACTGGGGGACTTGGACCAACTGAAGATGATATAACAAAACAA
ATCTTAGCTGATCATTTACAAAAACAGTTAGTAGAAGATGAATATCATATGAATAAAATTAATGAGTATTTCGCTTCCAG
AAACAGAACCATGACCGAAAACAACAAATTACAAGCGGTTATTATTAAAGATTCCGTGGTATTAAATAATGACTACGGCT
TTGCAGCTGGGATGTACTTAAAAGAAAATAACCATACTTACGTTTTGTTACCAGGACCACCATCTGAAATGAAGCCAATG
TTTACAAAATATGCTAACCCACTTCTTTTAAGTGAAAATGGCAATCAAAATATTTTAGAATCCAAAATCATGCGTTTTTT
TGGTATTGGAGAATCGCAATTAGCTGCTGATTTAAACGATTTGATTGTTAATCAAGTCAACCCAACGATTGCGACATATG
CTGGTGATAATGAAGTCGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGTTCTCTTGTGAAGGATACA
GAGGAGGAAATATTGCGCCGAGATGGCACTTTTTTATATGGATATGGAGAGGTTTCATTGCCTGAATTAGTTACGGCGAT
GTTGCTTGAAAAAGAGCTTACCATCTCTGCTGCAGAAAGTTTTACTGCTGGTTTATTTCAAGCGGAAATTGCTCGATTTC
CTGGTATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCACCT
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCTGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCGGATAGTCTAGAAGGCCATCCTGCTGGCACTATTTGGATTGGGC
TGAGCGTTAAAGGTCATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGACGTGCCGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.611

98.792

0.5
  cinA Streptococcus mitis SK321

49.165

100

0.498
  cinA Streptococcus pneumoniae TIGR4

48.571

100

0.493
  cinA Streptococcus mitis NCTC 12261

48.449

100

0.49
  cinA Streptococcus mutans UA159

49.272

99.517

0.49
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49
  cinA Streptococcus pneumoniae R6

48.333

100

0.49
  cinA Streptococcus pneumoniae D39

48.095

100

0.488
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386

Multiple sequence alignment