Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U876_RS02045 Genome accession   NZ_CP006870
Coordinates   450864..452105 (-) Length   413 a.a.
NCBI ID   WP_016352169.1    Uniprot ID   -
Organism   Aeromonas hydrophila NJ-35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445864..457105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U876_RS02015 (U876_02060) - 446704..447888 (+) 1185 WP_016352174.1 tetratricopeptide repeat protein -
  U876_RS02020 (U876_02065) mutT 447897..448310 (+) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  U876_RS02025 (U876_02070) yacG 448371..448565 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  U876_RS02030 (U876_02075) zapD 448575..449297 (-) 723 WP_016352172.1 cell division protein ZapD -
  U876_RS02035 (U876_02080) coaE 449335..449949 (-) 615 WP_016352171.1 dephospho-CoA kinase -
  U876_RS02040 (U876_02085) pilD 449969..450841 (-) 873 WP_016352170.1 A24 family peptidase Machinery gene
  U876_RS02045 (U876_02090) pilC 450864..452105 (-) 1242 WP_016352169.1 type II secretion system F family protein Machinery gene
  U876_RS02050 (U876_02095) pilB 452221..453927 (-) 1707 WP_016352168.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  U876_RS23915 tapA 453934..454356 (-) 423 WP_016352167.1 type IVa pilus major pilin TapA -
  U876_RS02065 (U876_02105) nadC 454679..455536 (-) 858 WP_016352165.1 carboxylating nicotinate-nucleotide diphosphorylase -
  U876_RS02070 (U876_02110) - 455542..456012 (-) 471 WP_024944772.1 retropepsin-like aspartic protease -
  U876_RS23920 (U876_02115) ampD 456160..456732 (+) 573 WP_016352163.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45426.54 Da        Isoelectric Point: 9.8734

>NTDB_id=114668 U876_RS02045 WP_016352169.1 450864..452105(-) (pilC) [Aeromonas hydrophila NJ-35]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=114668 U876_RS02045 WP_016352169.1 450864..452105(-) (pilC) [Aeromonas hydrophila NJ-35]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTAAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAAAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTCATGGGGCAGATTGCCGCCGATGTGGAGACCGGCACGCCTATGTCCGAGGCACTGCGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAGTCCGGCGCTCTGGAGACCATCTACGACCGCATC
GCCACCTATCGCGAAAAGTCCGAAGCCCTCAAATCCAAAATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTCACCTCCATTCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGACATCTTCAAGAGTTTCGGCGCCGAGC
TGCCCGCTTTTACCCAGTTCGTCATCGGTATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTTCTCTATGTGCGCGCCTGGCGCGCCTCACAGAAAGTCAGAGACAACACCGACAAGTTCATACTAACCAT
CCCCGTGGTTGGCATGATATTGCACAAGGCCGCCATGGCCCGTTTCGCCCGTACCCTCTCCACTACCTTCTCCGCCGGTA
TTCCACTGGTGGATGCCTTGGTCTCTGCGGCAGGCGCCTCCGGCAACTATGTCTACCGCACTGCCGTCATGGCCATTCGT
AACGAGGTGGTGGCAGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGAGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCT
ATGTATCTACCCATCTTCAAACTGGGGTCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.576

95.884

0.552
  pilC Acinetobacter baumannii D1279779

54.25

96.852

0.525
  pilC Legionella pneumophila strain ERS1305867

51.605

98.063

0.506
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Vibrio cholerae strain A1552

47.99

96.368

0.462
  pilC Vibrio campbellii strain DS40M4

47.355

96.126

0.455
  pilG Neisseria meningitidis 44/76-A

40.494

98.063

0.397
  pilG Neisseria gonorrhoeae MS11

40.494

98.063

0.397
  pilC Thermus thermophilus HB27

38

96.852

0.368

Multiple sequence alignment