Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PD5205_RS03990 Genome accession   NZ_LT853885
Coordinates   868460..869716 (-) Length   418 a.a.
NCBI ID   WP_040762949.1    Uniprot ID   A0A1Y6HG15
Organism   Xanthomonas fragariae strain PD5205     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 863460..874716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PD5205_RS03970 (PD5205_00801) - 863476..864864 (+) 1389 WP_065975084.1 IS5 family transposase -
  PD5205_RS03975 (PD5205_00803) - 865080..866205 (+) 1126 Protein_775 IS3 family transposase -
  PD5205_RS03980 (PD5205_00804) coaE 866965..867576 (-) 612 WP_002812280.1 dephospho-CoA kinase -
  PD5205_RS03985 (PD5205_00805) - 867590..868453 (-) 864 WP_002812278.1 A24 family peptidase -
  PD5205_RS03990 (PD5205_00806) pilC 868460..869716 (-) 1257 WP_040762949.1 type II secretion system F family protein Machinery gene
  PD5205_RS03995 (PD5205_00807) pilA 870067..870483 (+) 417 WP_002812272.1 pilin Machinery gene
  PD5205_RS04000 - 870598..870996 (+) 399 WP_335673686.1 pilin -
  PD5205_RS04005 (PD5205_00808) pilB 871066..872802 (+) 1737 WP_002812268.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PD5205_RS04015 (PD5205_00810) - 873080..874447 (+) 1368 Protein_782 IS5 family transposase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45427.74 Da        Isoelectric Point: 10.2926

>NTDB_id=1146452 PD5205_RS03990 WP_040762949.1 868460..869716(-) (pilC) [Xanthomonas fragariae strain PD5205]
MSAVRSAVKTKPSVKAEQMSPFVWEGTDKRGVKMKGEQTARNANLLKAELRRQGITPLVVKPRPKPLFGAAGKKVTPKDI
AFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQVRTDIEGGSSLHEAISRHPVQFDELYRNLVKAGEGAGVLET
VLDTIASYKENIEALKGKIKKALFYPAMVMAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVAWWWAL
LVVVVGAIASFIYAYKRSPAMQHGMDRLILKVPIIGQIMHNSAIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEAA
VLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1146452 PD5205_RS03990 WP_040762949.1 868460..869716(-) (pilC) [Xanthomonas fragariae strain PD5205]
ATGTCAGCAGTGCGTAGTGCAGTCAAGACTAAACCCTCTGTTAAGGCAGAGCAGATGAGCCCGTTTGTATGGGAGGGGAC
AGACAAACGTGGTGTGAAGATGAAAGGAGAGCAGACTGCCCGAAATGCAAATTTGCTTAAGGCAGAGCTGCGCCGCCAAG
GCATCACCCCGCTCGTGGTCAAACCCCGACCCAAGCCTCTGTTCGGCGCGGCGGGCAAGAAGGTCACTCCCAAGGATATT
GCCTTTTTCAGTAGACAAATGGCGACGATGATGAAGTCTGGCGTGCCCATTGTTGGTGCGCTGGAGATCATTGGCAGCGG
CCAGAAAAATCCACGCATGCGGAATATGGTCGGTCAAGTCCGCACCGACATTGAGGGCGGCTCTTCACTGCATGAAGCCA
TCAGCAGGCACCCCGTCCAATTCGATGAGCTATATCGAAACCTTGTCAAGGCTGGTGAAGGTGCTGGCGTCTTGGAAACG
GTGCTCGATACCATCGCCTCTTACAAAGAGAACATCGAAGCACTGAAAGGTAAGATCAAAAAGGCATTGTTTTATCCTGC
TATGGTCATGGCAGTAGCATTGCTTGTCAGCTCCATCCTTTTGATTTGGGTAGTTCCGCAGTTTGAGGATGTCTTTAAAG
GATTCGGCGCAGAGCTTCCAGCCTTTACTCAGCTGATCGTGAATGCATCACGCTTCATGGTGGCGTGGTGGTGGGCGCTC
TTGGTTGTAGTGGTTGGAGCGATCGCAAGTTTTATTTACGCCTACAAACGCTCTCCCGCAATGCAACACGGCATGGACAG
ACTGATTCTTAAAGTGCCGATCATCGGTCAAATCATGCACAACAGCGCCATTGCACGTTTTGCGCGGACTACTGCAGTGA
CGTTCAAAGCCGGCGTACCGCTTGTCGAAGCATTGAGCATTGTGGCTGGCGCAACCGGCAATTCGGTTTATGAGGCTGCT
GTGCTTCGCATGCGCGACGACGTCTCAGTAGGCTACCCAGTCAACGTAGCGATGAAGCAGGTCAACCTGTTTCCCCACAT
GGTGGTGCAGATGACCGCCATCGGCGAAGAGGCCGGCGCCTTGGATGCCATGTTGTTCAAAGTTGCCGAATACTTCGAGC
AAGAGGTCAACAACGCCGTCGATGCTCTGAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACGATCGTTGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6HG15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.401

94.976

0.507
  pilC Pseudomonas stutzeri DSM 10701

52.605

96.411

0.507
  pilC Acinetobacter baylyi ADP1

52.228

96.651

0.505
  pilC Acinetobacter baumannii D1279779

50.743

96.651

0.49
  pilG Neisseria gonorrhoeae MS11

42.611

97.129

0.414
  pilG Neisseria meningitidis 44/76-A

42.365

97.129

0.411
  pilC Vibrio cholerae strain A1552

40.686

97.608

0.397
  pilC Vibrio campbellii strain DS40M4

39.702

96.411

0.383

Multiple sequence alignment