Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | PD5205_RS04005 | Genome accession | NZ_LT853885 |
| Coordinates | 871066..872802 (+) | Length | 578 a.a. |
| NCBI ID | WP_002812268.1 | Uniprot ID | - |
| Organism | Xanthomonas fragariae strain PD5205 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 873110..874447 | 871066..872802 | flank | 308 |
Gene organization within MGE regions
Location: 871066..874447
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PD5205_RS04005 (PD5205_00808) | pilB | 871066..872802 (+) | 1737 | WP_002812268.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PD5205_RS04015 (PD5205_00810) | - | 873080..874447 (+) | 1368 | Protein_782 | IS5 family transposase | - |
Sequence
Protein
Download Length: 578 a.a. Molecular weight: 62553.75 Da Isoelectric Point: 5.4491
>NTDB_id=1146454 PD5205_RS04005 WP_002812268.1 871066..872802(+) (pilB) [Xanthomonas fragariae strain PD5205]
MNAIATANLVGITGIARRLVQDGALEEAVARAAMDQAAAAKIPLPQWFSEKKLVSASQLAAANAVEFGMPLMDVSVFDAS
QNAIKLVSEELLQKYQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNAALGSSLG
DDDEGMGDLDVSAGDEDMGAGGDAGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLSQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIEKLGYEADQQK
LFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCSNCKRKSTLP
EHALLAEGFTAEQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQSIGIKDLRQSALI
KAAHGVTSLAEINRVTKD
MNAIATANLVGITGIARRLVQDGALEEAVARAAMDQAAAAKIPLPQWFSEKKLVSASQLAAANAVEFGMPLMDVSVFDAS
QNAIKLVSEELLQKYQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNAALGSSLG
DDDEGMGDLDVSAGDEDMGAGGDAGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLSQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIEKLGYEADQQK
LFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCSNCKRKSTLP
EHALLAEGFTAEQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQSIGIKDLRQSALI
KAAHGVTSLAEINRVTKD
Nucleotide
Download Length: 1737 bp
>NTDB_id=1146454 PD5205_RS04005 WP_002812268.1 871066..872802(+) (pilB) [Xanthomonas fragariae strain PD5205]
ATGAACGCGATTGCGACTGCAAATCTGGTTGGAATCACCGGCATCGCGCGTCGCTTGGTGCAGGATGGCGCACTTGAGGA
AGCTGTTGCGCGTGCGGCGATGGACCAGGCTGCGGCAGCCAAGATTCCCCTGCCGCAATGGTTCTCCGAGAAAAAATTAG
TCTCCGCATCCCAGCTCGCTGCCGCCAACGCAGTCGAGTTCGGTATGCCGTTGATGGATGTGTCGGTGTTCGACGCCAGC
CAGAACGCCATCAAGCTGGTCAGCGAGGAGTTGCTCCAGAAGTACCAGGTGCTGCCTCTGTTCAAGCGCGGCAACCGATT
GTTTGTGGGGGTGAGCAACCCGACCCAGACCCGGGCGCTGGACGACATCAAGTTCCATACCAACCTGGTGGTCGAGCCGA
TCCTGGTCGACGAGGACCAGATCCGTCGCACCCTGGAGCAGTGGCAAGCCAGCAATGCGGCGCTTGGCTCGTCGCTCGGT
GACGACGATGAGGGGATGGGCGACCTGGACGTGTCGGCCGGTGACGAGGACATGGGCGCCGGCGGGGATGCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCCTCCGACA
TCCATTTCGAGCCCTATGAGGACGACTATCGGGTGCGCTTGCGCATCGATGGGCTGCTGAAGAACGTGGCCAAGGCGCCG
GTGAAACTGAGCCAGCGCATCGCGGCACGCCTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGTATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGTGTGAGCACCTTGCCGACGTTGTTCGGCGAGA
AGGTGGTGCTGCGTATCCTTGACGGCAGCGCGGCCAAGCTGGGCATCGAGAAGCTGGGCTATGAGGCGGACCAGCAGAAG
CTGTTCCTGGAGGCGATCCACAAACCGTACGGGATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGTT
GTATACGGCGCTGGGCATCCTCAACGACGAGACGCGCAATATCTCCACGGCCGAGGATCCGGTGGAGATCCGTCTGCCTG
GCGTCAACCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCTGCGCTACGCTCGTTCCTGCGCCAGGATCCG
GACATCATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGTCACATGGT
GTTGTCGACGCTGCACACCAATGATGCGCCGCAGACCATCGCGCGTTTGATGAACATGGGCATTGCGCCCTACAACATCA
CCTCATCGGTGACTTTGGTGATTGCGCAGCGCCTGGCGCGGCGGTTGTGCAGCAACTGCAAGCGCAAATCGACCTTGCCC
GAGCATGCGTTGCTGGCGGAAGGGTTCACTGCAGAGCAGCTCGCTGCCGGTATCGAGCTATACGAAGCGGTCGGCTGCGA
CGAGTGCACCGAAGGCTATAAGGGCCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAGATCGGCGCGATCGTGC
TGGAAGGCGGTAACGCGATGCAGATCGCCGAGGCGGCGCAGAGTATCGGTATCAAAGATCTGCGGCAGTCGGCGCTGATC
AAGGCGGCGCATGGGGTGACGAGCTTGGCTGAGATCAATCGTGTGACGAAGGATTAA
ATGAACGCGATTGCGACTGCAAATCTGGTTGGAATCACCGGCATCGCGCGTCGCTTGGTGCAGGATGGCGCACTTGAGGA
AGCTGTTGCGCGTGCGGCGATGGACCAGGCTGCGGCAGCCAAGATTCCCCTGCCGCAATGGTTCTCCGAGAAAAAATTAG
TCTCCGCATCCCAGCTCGCTGCCGCCAACGCAGTCGAGTTCGGTATGCCGTTGATGGATGTGTCGGTGTTCGACGCCAGC
CAGAACGCCATCAAGCTGGTCAGCGAGGAGTTGCTCCAGAAGTACCAGGTGCTGCCTCTGTTCAAGCGCGGCAACCGATT
GTTTGTGGGGGTGAGCAACCCGACCCAGACCCGGGCGCTGGACGACATCAAGTTCCATACCAACCTGGTGGTCGAGCCGA
TCCTGGTCGACGAGGACCAGATCCGTCGCACCCTGGAGCAGTGGCAAGCCAGCAATGCGGCGCTTGGCTCGTCGCTCGGT
GACGACGATGAGGGGATGGGCGACCTGGACGTGTCGGCCGGTGACGAGGACATGGGCGCCGGCGGGGATGCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCCTCCGACA
TCCATTTCGAGCCCTATGAGGACGACTATCGGGTGCGCTTGCGCATCGATGGGCTGCTGAAGAACGTGGCCAAGGCGCCG
GTGAAACTGAGCCAGCGCATCGCGGCACGCCTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGTATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGTGTGAGCACCTTGCCGACGTTGTTCGGCGAGA
AGGTGGTGCTGCGTATCCTTGACGGCAGCGCGGCCAAGCTGGGCATCGAGAAGCTGGGCTATGAGGCGGACCAGCAGAAG
CTGTTCCTGGAGGCGATCCACAAACCGTACGGGATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGTT
GTATACGGCGCTGGGCATCCTCAACGACGAGACGCGCAATATCTCCACGGCCGAGGATCCGGTGGAGATCCGTCTGCCTG
GCGTCAACCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCTGCGCTACGCTCGTTCCTGCGCCAGGATCCG
GACATCATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGTCACATGGT
GTTGTCGACGCTGCACACCAATGATGCGCCGCAGACCATCGCGCGTTTGATGAACATGGGCATTGCGCCCTACAACATCA
CCTCATCGGTGACTTTGGTGATTGCGCAGCGCCTGGCGCGGCGGTTGTGCAGCAACTGCAAGCGCAAATCGACCTTGCCC
GAGCATGCGTTGCTGGCGGAAGGGTTCACTGCAGAGCAGCTCGCTGCCGGTATCGAGCTATACGAAGCGGTCGGCTGCGA
CGAGTGCACCGAAGGCTATAAGGGCCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAGATCGGCGCGATCGTGC
TGGAAGGCGGTAACGCGATGCAGATCGCCGAGGCGGCGCAGAGTATCGGTATCAAAGATCTGCGGCAGTCGGCGCTGATC
AAGGCGGCGCATGGGGTGACGAGCTTGGCTGAGATCAATCGTGTGACGAAGGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
56.131 |
100 |
0.562 |
| pilB | Acinetobacter baylyi ADP1 |
55.81 |
98.27 |
0.548 |
| pilB | Legionella pneumophila strain ERS1305867 |
52.373 |
98.443 |
0.516 |
| pilF | Neisseria gonorrhoeae MS11 |
49.12 |
98.27 |
0.483 |
| pilB | Vibrio cholerae strain A1552 |
49.639 |
95.848 |
0.476 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
45.965 |
98.616 |
0.453 |
| pilB | Vibrio campbellii strain DS40M4 |
45.87 |
98.443 |
0.452 |