Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NBC2815_RS16040 Genome accession   NZ_LT853880
Coordinates   3462158..3463414 (+) Length   418 a.a.
NCBI ID   WP_088061938.1    Uniprot ID   -
Organism   Xanthomonas fragariae strain NBC2815     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3457158..3468414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBC2815_RS16015 (NBC2815_03197) - 3457427..3458794 (-) 1368 WP_088062623.1 IS5 family transposase -
  NBC2815_RS16025 (NBC2815_03198) pilB 3459072..3460808 (-) 1737 WP_002812268.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NBC2815_RS16030 - 3460878..3461309 (-) 432 WP_088061936.1 pilin -
  NBC2815_RS16035 (NBC2815_03199) pilA 3461391..3461807 (-) 417 WP_002812272.1 pilin Machinery gene
  NBC2815_RS16040 (NBC2815_03200) pilC 3462158..3463414 (+) 1257 WP_088061938.1 type II secretion system F family protein Machinery gene
  NBC2815_RS16045 (NBC2815_03201) - 3463421..3464284 (+) 864 WP_088061940.1 A24 family peptidase -
  NBC2815_RS16050 (NBC2815_03202) coaE 3464298..3464909 (+) 612 WP_002812280.1 dephospho-CoA kinase -
  NBC2815_RS16055 (NBC2815_03203) - 3465669..3466794 (-) 1126 Protein_3127 IS3 family transposase -
  NBC2815_RS20575 - 3466966..3467181 (+) 216 WP_145953994.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45469.78 Da        Isoelectric Point: 10.2442

>NTDB_id=1146430 NBC2815_RS16040 WP_088061938.1 3462158..3463414(+) (pilC) [Xanthomonas fragariae strain NBC2815]
MSAVRSAVKTKPSVQAEQMSPFVWEGTDKRGVKMKGEQTARNANLLKAELRRQGITPLVVKPRPKPLFGAAGKKVTPKDI
AFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQVRTDIEGGSSLHEAISRHPVQFDELYRNLVKAGEGAGVLET
VLDTIASYKENIEALKGKIKKALFYPAMVMAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVAWWWAL
LVIVVGAIVSFIYAYKRSPAMQHGMDRLILKVPIIGQIMHNSAIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEAA
VLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1146430 NBC2815_RS16040 WP_088061938.1 3462158..3463414(+) (pilC) [Xanthomonas fragariae strain NBC2815]
ATGTCAGCAGTGCGTAGTGCAGTCAAGACTAAACCCTCTGTTCAGGCAGAGCAGATGAGCCCGTTTGTATGGGAGGGGAC
AGACAAACGTGGTGTGAAGATGAAAGGAGAGCAGACTGCCCGAAATGCAAATTTGCTTAAGGCAGAGCTGCGCCGCCAAG
GCATCACCCCGCTCGTGGTCAAACCCCGACCCAAGCCTCTGTTCGGCGCGGCGGGCAAGAAGGTCACTCCCAAGGATATT
GCCTTTTTCAGTAGACAAATGGCGACGATGATGAAGTCTGGCGTGCCCATTGTTGGTGCGCTGGAGATCATTGGCAGCGG
CCAGAAAAATCCACGCATGCGGAATATGGTCGGTCAAGTCCGCACCGACATTGAGGGCGGCTCTTCACTGCATGAAGCCA
TCAGCAGGCACCCCGTCCAATTCGATGAGCTATATCGAAATCTTGTCAAGGCTGGTGAAGGTGCTGGCGTCTTGGAAACG
GTGCTCGATACCATCGCCTCTTACAAAGAGAACATCGAAGCACTGAAAGGTAAGATCAAAAAGGCATTGTTTTATCCTGC
TATGGTCATGGCAGTAGCCTTGCTTGTCAGCTCCATCCTTTTGATTTGGGTAGTTCCGCAGTTTGAGGATGTCTTTAAAG
GATTCGGCGCAGAGCTTCCAGCCTTTACTCAGCTGATCGTGAATGCATCACGCTTCATGGTGGCGTGGTGGTGGGCGCTC
TTGGTTATAGTGGTTGGAGCGATCGTAAGTTTTATTTACGCCTACAAACGCTCTCCCGCAATGCAACACGGCATGGACAG
ACTGATTCTTAAAGTGCCGATCATCGGTCAAATCATGCACAACAGCGCCATTGCACGTTTTGCGCGGACTACTGCAGTGA
CGTTCAAAGCCGGCGTACCGCTTGTCGAAGCATTGAGCATTGTGGCTGGCGCAACCGGCAATTCGGTTTATGAGGCTGCT
GTGCTTCGCATGCGCGACGACGTCTCAGTAGGCTACCCAGTCAACGTAGCGATGAAGCAGGTCAACCTGTTTCCCCACAT
GGTGGTGCAGATGACCGCCATCGGCGAAGAGGCCGGCGCCTTGGATGCCATGTTGTTCAAAGTTGCCGAATACTTCGAGC
AAGAGGTCAACAACGCCGTCGATGCTCTGAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACGATCGTTGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.401

94.976

0.507
  pilC Pseudomonas stutzeri DSM 10701

52.357

96.411

0.505
  pilC Acinetobacter baylyi ADP1

51.485

96.651

0.498
  pilC Acinetobacter baumannii D1279779

50.248

96.651

0.486
  pilG Neisseria gonorrhoeae MS11

42.611

97.129

0.414
  pilG Neisseria meningitidis 44/76-A

42.365

97.129

0.411
  pilC Vibrio cholerae strain A1552

40.148

97.129

0.39
  pilC Vibrio campbellii strain DS40M4

39.702

96.411

0.383

Multiple sequence alignment