Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PHAGEPCYII10_RS23990 Genome accession   NZ_LT608330
Coordinates   5239110..5240327 (+) Length   405 a.a.
NCBI ID   WP_016254080.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate PA14Or_reads     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5234110..5245327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHAGEPCYII10_RS23970 nadC 5234862..5235710 (+) 849 WP_003141348.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PHAGEPCYII10_RS23980 (PA14OR_4770) - 5235873..5236430 (-) 558 WP_225011032.1 hypothetical protein -
  PHAGEPCYII10_RS30845 - 5236635..5237174 (-) 540 WP_003141352.1 pilin -
  PHAGEPCYII10_RS23985 pilB 5237403..5239106 (+) 1704 WP_003141354.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PHAGEPCYII10_RS23990 pilC 5239110..5240327 (+) 1218 WP_016254080.1 type II secretion system F family protein Machinery gene
  PHAGEPCYII10_RS23995 pilD 5240330..5241202 (+) 873 WP_003141356.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  PHAGEPCYII10_RS24000 coaE 5241199..5241810 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  PHAGEPCYII10_RS24005 (PA14OR_4777) yacG 5241807..5242007 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  PHAGEPCYII10_RS24010 (PA14OR_4778) - 5242044..5242253 (-) 210 WP_003094660.1 hypothetical protein -
  PHAGEPCYII10_RS24015 (PA14OR_4779) - 5242359..5243048 (-) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  PHAGEPCYII10_RS24020 (PA14OR_4780) - 5243045..5243515 (-) 471 WP_003094664.1 hypothetical protein -
  PHAGEPCYII10_RS24025 (PA14OR_4781) - 5243512..5243937 (-) 426 WP_003103865.1 GNAT family N-acetyltransferase -
  PHAGEPCYII10_RS24030 (PA14OR_4782) - 5244070..5244699 (+) 630 WP_003094668.1 DUF1780 domain-containing protein -
  PHAGEPCYII10_RS24035 (PA14OR_4783) - 5244696..5245145 (+) 450 WP_003141357.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44041.92 Da        Isoelectric Point: 9.8417

>NTDB_id=1145262 PHAGEPCYII10_RS23990 WP_016254080.1 5239110..5240327(+) (pilC) [Pseudomonas aeruginosa isolate PA14Or_reads]
MADKALKTSVFIWEGTDKKGSKVKGELAGQNPMLVKAQLRKQGINPLKVRKKGITLFGAGKKIKPMDIALFTRQMSTMMG
AGVPLLQSFDIIGEGFENPNMRKLVDEIKQDVAAGNSLASSLRKKPIYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVIVVALVVSAILLIKVVPQFQSVFANFGAELPAFTQMVINLSEMLQEWWLIVLIGLFAAAFAFR
EAHRRSQKLRDSVDRGLLKLPIIGGILYKSAIARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKNAVTKIKQDVSSGM
QLNFSMRTTNVFPSMAIQMAAIGEESGSLDEMLGKVAGFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1145262 PHAGEPCYII10_RS23990 WP_016254080.1 5239110..5240327(+) (pilC) [Pseudomonas aeruginosa isolate PA14Or_reads]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCATCTGGGAAGGCACTGATAAGAAAGGCAGCAAGGTCAAAGGAGAGTT
GGCCGGGCAAAACCCTATGCTGGTGAAGGCTCAACTGCGCAAACAGGGTATCAACCCACTAAAGGTCCGCAAGAAAGGTA
TCACCCTGTTTGGGGCAGGGAAGAAGATTAAGCCCATGGACATCGCCCTGTTCACTCGGCAGATGTCTACCATGATGGGT
GCCGGCGTACCGTTACTGCAATCTTTTGACATCATCGGCGAAGGATTCGAAAATCCAAACATGCGCAAGCTAGTCGATGA
GATCAAGCAGGATGTTGCCGCCGGTAACAGCTTAGCCAGTTCACTTCGAAAGAAACCCATTTACTTCGATGATCTCTACT
GCAACCTGGTCGATGCTGGCGAACAGTCCGGTGCTTTGGAGACATTATTGGATCGGGTAGCAACTTATAAAGAAAAGACA
GAATCCCTGAAAGCCAAAATTAAAAAAGCCATGACTTATCCCATTGCAGTAATTGTAGTGGCCCTTGTAGTATCGGCGAT
CCTTCTGATAAAAGTGGTCCCACAGTTCCAGTCCGTATTTGCAAATTTTGGTGCCGAGTTGCCGGCCTTTACTCAAATGG
TCATCAATCTTTCCGAGATGCTTCAAGAGTGGTGGCTCATAGTGCTTATTGGTCTTTTTGCCGCAGCTTTTGCATTTAGG
GAAGCTCATCGGCGCTCGCAAAAACTGAGAGATTCAGTAGATCGGGGCCTGCTGAAACTACCTATCATCGGCGGGATACT
TTACAAATCAGCTATCGCCCGCTACGCCCGAACGCTATCCACTACCTTTGCGGCTGGAGTGCCTCTGGTAGAAGCTCTGG
ACTCCGTTTCCGGAGCAACTGGCAACGTGGTATTCAAGAATGCCGTTACCAAGATCAAACAAGACGTGTCCAGCGGCATG
CAATTGAACTTTTCCATGCGCACCACCAATGTTTTCCCCAGTATGGCTATCCAGATGGCTGCAATTGGCGAGGAATCAGG
TTCGCTAGATGAGATGTTAGGAAAAGTTGCCGGTTTCTATGAGGAAGAAGTCGATAACGCCGTCGACAACCTGACAACGT
TGATGGAGCCGATGATCATGGCCGTGCTCGGCGTACTGGTCGGCGGCCTGATCATCGCTATGTATCTACCGATCTTCCAA
CTGGGTTCCGTTGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.753

100

0.798
  pilC Acinetobacter baumannii D1279779

60.891

99.753

0.607
  pilC Acinetobacter baylyi ADP1

59.852

100

0.6
  pilC Legionella pneumophila strain ERS1305867

55.303

97.778

0.541
  pilG Neisseria meningitidis 44/76-A

46.269

99.259

0.459
  pilG Neisseria gonorrhoeae MS11

46.02

99.259

0.457
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4
  pilC Thermus thermophilus HB27

38.404

99.012

0.38

Multiple sequence alignment