Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BFP94_RS04770 Genome accession   NZ_LT604072
Coordinates   1156003..1157262 (-) Length   419 a.a.
NCBI ID   WP_003477101.1    Uniprot ID   A0A1C3TKP3
Organism   Xanthomonas translucens pv. translucens DSM 18974 isolate peng1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1151003..1162262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFP94_RS21655 (BN444_01941) - 1152038..1152274 (+) 237 WP_003477111.1 hypothetical protein -
  BFP94_RS04750 (BN444_01940) - 1152372..1153049 (+) 678 WP_003466405.1 response regulator transcription factor -
  BFP94_RS04755 (BN444_01939) - 1153042..1154376 (+) 1335 WP_003477107.1 HAMP domain-containing sensor histidine kinase -
  BFP94_RS04760 (BN444_01938) coaE 1154499..1155119 (-) 621 WP_003477105.1 dephospho-CoA kinase -
  BFP94_RS04765 (BN444_01937) - 1155133..1155996 (-) 864 WP_003477103.1 A24 family peptidase -
  BFP94_RS04770 (BN444_01936) pilC 1156003..1157262 (-) 1260 WP_003477101.1 type II secretion system F family protein Machinery gene
  BFP94_RS19820 - 1157649..1158086 (+) 438 WP_038232341.1 pilin -
  BFP94_RS04775 (BN444_01934) - 1158332..1158709 (-) 378 WP_080603077.1 hypothetical protein -
  BFP94_RS04780 (BN444_01933) pilB 1158825..1160561 (+) 1737 WP_003477096.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BFP94_RS04785 (BN444_01932) - 1160571..1161188 (-) 618 WP_003477095.1 Fic family protein -
  BFP94_RS04790 (BN444_01931) - 1161185..1161367 (-) 183 WP_003477093.1 YhfG family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45522.64 Da        Isoelectric Point: 10.1825

>NTDB_id=1145018 BFP94_RS04770 WP_003477101.1 1156003..1157262(-) (pilC) [Xanthomonas translucens pv. translucens DSM 18974 isolate peng1]
MSATRSAVSKEPVARNTSQQVPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKISTKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
LLIVLVGSIVGFVFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1145018 BFP94_RS04770 WP_003477101.1 1156003..1157262(-) (pilC) [Xanthomonas translucens pv. translucens DSM 18974 isolate peng1]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATACCAGCCAGCAGGTCCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACGCCGTCGGTGGTCAAGCCGAAACCCAAACCCCTGTTCGGCGCCGCCGGCAGCAAGATCAGCACCAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGTGTCCCCATCGTGGGATCGCTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGATGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGTGTACTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCGGTCATGGCCGTGGCGCTCCTGGTCAGCTCGATCTTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCGGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTGGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCGTCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CCGACTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAGAAA
GCCGTGCTGCGCATGCGCGACGACGTGTCGGTCGGCTACCCGGTCAATGTGGCGATGAAACAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTAGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3TKP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Legionella pneumophila strain ERS1305867

51.733

96.42

0.499
  pilC Acinetobacter baylyi ADP1

50.735

97.375

0.494
  pilC Acinetobacter baumannii D1279779

50.49

97.375

0.492
  pilG Neisseria gonorrhoeae MS11

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria meningitidis 44/76-A

42.462

94.988

0.403
  pilC Vibrio campbellii strain DS40M4

40.05

94.749

0.379

Multiple sequence alignment