Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | R615_RS13675 | Genome accession | NZ_CP006829 |
| Coordinates | 3009523..3010752 (+) | Length | 409 a.a. |
| NCBI ID | WP_025266214.1 | Uniprot ID | - |
| Organism | Thalassolituus oleivorans R6-15 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3004523..3015752
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R615_RS18680 | - | 3005172..3005280 (+) | 109 | Protein_2718 | pilin | - |
| R615_RS18555 (R615_13945) | - | 3005316..3005660 (+) | 345 | WP_414625685.1 | hypothetical protein | - |
| R615_RS13665 (R615_13955) | - | 3005870..3007708 (+) | 1839 | WP_155990873.1 | sulfatase-like hydrolase/transferase | - |
| R615_RS13670 (R615_13960) | pilB | 3007781..3009478 (+) | 1698 | WP_025266213.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| R615_RS13675 (R615_13965) | pilC | 3009523..3010752 (+) | 1230 | WP_025266214.1 | type II secretion system F family protein | Machinery gene |
| R615_RS13680 (R615_13970) | - | 3010757..3011644 (+) | 888 | WP_025266215.1 | prepilin peptidase | - |
| R615_RS13685 (R615_13975) | coaE | 3011684..3012283 (+) | 600 | WP_025266216.1 | dephospho-CoA kinase | - |
| R615_RS13690 (R615_13980) | yacG | 3012320..3012514 (+) | 195 | WP_015485862.1 | DNA gyrase inhibitor YacG | - |
| R615_RS13695 (R615_13985) | - | 3012570..3013751 (-) | 1182 | WP_025266217.1 | two-component system response regulator | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 44579.25 Da Isoelectric Point: 8.9640
>NTDB_id=114311 R615_RS13675 WP_025266214.1 3009523..3010752(+) (pilC) [Thalassolituus oleivorans R6-15]
MAKPIKTTTFQWEGTNRRGQTVKGELSGQNPAMVKAQLRKQGVEPKKIKRLSQPLFGIGGGPAKKRIKPADITFFTRQMA
TMVKAGVPLVQSFDIVADGVDNISLREVIYAIRDSVSAGNDFASALGQYPQYFDELTCNLIESGEQAGALESMLDKVAIY
KEKTEELKAKIKKALMYPMITLLVALGVTAILLIKVVPTFDAMFKGFGAELPAPTQFVVMLSDWMQANYLYVFGGLIFLV
VAFMQGMKKSQSFKDNVERTLLKAPVFGDLIMKASVARYARVLSTTFAAGVPLVEALDSVAGAVGNVVYRNAVYSIRDEV
ASGQQMHFAMRATKVFPNMVVQMTSIGEESGALDSMLDKAASYYEAEVDNAVDNMTSLLEPAIMVFLGVVIGGMIISMYL
PIFSMGDVI
MAKPIKTTTFQWEGTNRRGQTVKGELSGQNPAMVKAQLRKQGVEPKKIKRLSQPLFGIGGGPAKKRIKPADITFFTRQMA
TMVKAGVPLVQSFDIVADGVDNISLREVIYAIRDSVSAGNDFASALGQYPQYFDELTCNLIESGEQAGALESMLDKVAIY
KEKTEELKAKIKKALMYPMITLLVALGVTAILLIKVVPTFDAMFKGFGAELPAPTQFVVMLSDWMQANYLYVFGGLIFLV
VAFMQGMKKSQSFKDNVERTLLKAPVFGDLIMKASVARYARVLSTTFAAGVPLVEALDSVAGAVGNVVYRNAVYSIRDEV
ASGQQMHFAMRATKVFPNMVVQMTSIGEESGALDSMLDKAASYYEAEVDNAVDNMTSLLEPAIMVFLGVVIGGMIISMYL
PIFSMGDVI
Nucleotide
Download Length: 1230 bp
>NTDB_id=114311 R615_RS13675 WP_025266214.1 3009523..3010752(+) (pilC) [Thalassolituus oleivorans R6-15]
ATGGCTAAACCAATAAAAACAACGACTTTCCAATGGGAAGGCACGAATCGCCGCGGACAAACCGTCAAGGGTGAGCTGAG
CGGTCAAAACCCAGCGATGGTAAAGGCACAGCTGCGCAAGCAAGGTGTTGAACCGAAAAAAATTAAACGTCTATCCCAAC
CTTTATTTGGTATAGGTGGCGGTCCGGCGAAGAAACGTATCAAACCTGCTGATATCACCTTTTTCACACGCCAAATGGCC
ACCATGGTGAAAGCGGGTGTGCCGTTAGTACAGTCGTTCGATATTGTTGCCGATGGCGTGGATAATATTTCTCTACGAGA
AGTTATCTATGCCATTCGCGATTCGGTATCAGCCGGTAATGACTTTGCTTCAGCACTAGGACAATATCCGCAGTATTTTG
ACGAACTGACCTGCAATCTTATCGAATCGGGTGAGCAAGCGGGTGCGCTTGAATCTATGCTGGATAAGGTAGCCATCTAC
AAAGAAAAAACCGAAGAGCTAAAAGCTAAAATTAAAAAAGCGCTTATGTACCCTATGATTACCTTATTAGTGGCATTGGG
TGTAACTGCTATTCTGTTGATAAAAGTCGTACCGACTTTCGATGCCATGTTTAAAGGCTTTGGCGCTGAATTACCCGCAC
CAACCCAATTTGTTGTGATGCTTTCCGACTGGATGCAGGCAAATTACCTATATGTCTTTGGTGGGCTAATTTTCCTTGTC
GTTGCTTTTATGCAAGGGATGAAAAAATCTCAATCGTTTAAAGACAACGTAGAAAGAACACTGCTCAAAGCTCCAGTTTT
CGGCGACTTGATAATGAAAGCATCGGTTGCACGGTATGCACGAGTACTTTCAACCACCTTCGCAGCGGGTGTTCCCTTAG
TTGAAGCCTTAGATTCTGTCGCCGGTGCCGTTGGCAACGTTGTTTACCGTAATGCGGTATACAGCATCCGCGACGAAGTC
GCATCTGGCCAACAAATGCATTTTGCCATGCGTGCAACTAAGGTATTCCCTAATATGGTGGTGCAAATGACCAGTATTGG
TGAAGAGTCTGGTGCCCTTGATTCAATGCTAGATAAAGCAGCCAGCTACTATGAAGCTGAAGTTGATAACGCCGTAGACA
ATATGACCTCATTACTTGAGCCTGCCATTATGGTGTTTTTAGGTGTTGTTATCGGCGGTATGATTATTTCGATGTACTTG
CCCATTTTCTCTATGGGAGATGTTATTTAA
ATGGCTAAACCAATAAAAACAACGACTTTCCAATGGGAAGGCACGAATCGCCGCGGACAAACCGTCAAGGGTGAGCTGAG
CGGTCAAAACCCAGCGATGGTAAAGGCACAGCTGCGCAAGCAAGGTGTTGAACCGAAAAAAATTAAACGTCTATCCCAAC
CTTTATTTGGTATAGGTGGCGGTCCGGCGAAGAAACGTATCAAACCTGCTGATATCACCTTTTTCACACGCCAAATGGCC
ACCATGGTGAAAGCGGGTGTGCCGTTAGTACAGTCGTTCGATATTGTTGCCGATGGCGTGGATAATATTTCTCTACGAGA
AGTTATCTATGCCATTCGCGATTCGGTATCAGCCGGTAATGACTTTGCTTCAGCACTAGGACAATATCCGCAGTATTTTG
ACGAACTGACCTGCAATCTTATCGAATCGGGTGAGCAAGCGGGTGCGCTTGAATCTATGCTGGATAAGGTAGCCATCTAC
AAAGAAAAAACCGAAGAGCTAAAAGCTAAAATTAAAAAAGCGCTTATGTACCCTATGATTACCTTATTAGTGGCATTGGG
TGTAACTGCTATTCTGTTGATAAAAGTCGTACCGACTTTCGATGCCATGTTTAAAGGCTTTGGCGCTGAATTACCCGCAC
CAACCCAATTTGTTGTGATGCTTTCCGACTGGATGCAGGCAAATTACCTATATGTCTTTGGTGGGCTAATTTTCCTTGTC
GTTGCTTTTATGCAAGGGATGAAAAAATCTCAATCGTTTAAAGACAACGTAGAAAGAACACTGCTCAAAGCTCCAGTTTT
CGGCGACTTGATAATGAAAGCATCGGTTGCACGGTATGCACGAGTACTTTCAACCACCTTCGCAGCGGGTGTTCCCTTAG
TTGAAGCCTTAGATTCTGTCGCCGGTGCCGTTGGCAACGTTGTTTACCGTAATGCGGTATACAGCATCCGCGACGAAGTC
GCATCTGGCCAACAAATGCATTTTGCCATGCGTGCAACTAAGGTATTCCCTAATATGGTGGTGCAAATGACCAGTATTGG
TGAAGAGTCTGGTGCCCTTGATTCAATGCTAGATAAAGCAGCCAGCTACTATGAAGCTGAAGTTGATAACGCCGTAGACA
ATATGACCTCATTACTTGAGCCTGCCATTATGGTGTTTTTAGGTGTTGTTATCGGCGGTATGATTATTTCGATGTACTTG
CCCATTTTCTCTATGGGAGATGTTATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
58.968 |
99.511 |
0.587 |
| pilC | Acinetobacter baumannii D1279779 |
55.86 |
98.044 |
0.548 |
| pilC | Acinetobacter baylyi ADP1 |
54.364 |
98.044 |
0.533 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.621 |
98.044 |
0.506 |
| pilG | Neisseria gonorrhoeae MS11 |
43.704 |
99.022 |
0.433 |
| pilG | Neisseria meningitidis 44/76-A |
43.457 |
99.022 |
0.43 |
| pilC | Vibrio cholerae strain A1552 |
41.626 |
99.267 |
0.413 |
| pilC | Vibrio campbellii strain DS40M4 |
39.75 |
97.8 |
0.389 |