Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DQL18_RS04010 | Genome accession | NZ_LS483486 |
| Coordinates | 762011..762460 (+) | Length | 149 a.a. |
| NCBI ID | WP_011271973.1 | Uniprot ID | Q4QNP4 |
| Organism | Haemophilus influenzae strain NCTC12194 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 757011..767460
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL18_RS03990 (NCTC12194_00806) | rsmE | 757476..758213 (-) | 738 | WP_011271976.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| DQL18_RS03995 (NCTC12194_00807) | lnt | 758263..759792 (-) | 1530 | WP_079989936.1 | apolipoprotein N-acyltransferase | - |
| DQL18_RS04000 (NCTC12194_00808) | corC | 759815..760714 (-) | 900 | WP_005656283.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| DQL18_RS04005 (NCTC12194_00809) | ampD | 761336..761896 (-) | 561 | WP_011271974.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| DQL18_RS04010 (NCTC12194_00810) | pilA | 762011..762460 (+) | 450 | WP_011271973.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| DQL18_RS04015 (NCTC12194_00811) | pilB | 762457..763851 (+) | 1395 | WP_105905461.1 | GspE/PulE family protein | Machinery gene |
| DQL18_RS04020 (NCTC12194_00812) | pilC | 763848..765068 (+) | 1221 | WP_042601844.1 | type II secretion system F family protein | Machinery gene |
| DQL18_RS04025 (NCTC12194_00813) | pilD | 765065..765757 (+) | 693 | WP_105905460.1 | prepilin peptidase | Machinery gene |
| DQL18_RS04030 (NCTC12194_00814) | rho | 765811..767073 (-) | 1263 | WP_005648966.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15572.89 Da Isoelectric Point: 8.0922
>NTDB_id=1142629 DQL18_RS04010 WP_011271973.1 762011..762460(+) (pilA) [Haemophilus influenzae strain NCTC12194]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTNCTGGKNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTNCTGGKNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=1142629 DQL18_RS04010 WP_011271973.1 762011..762460(+) (pilA) [Haemophilus influenzae strain NCTC12194]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAACTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAACTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| pilA | Haemophilus influenzae Rd KW20 |
91.946 |
100 |
0.919 |
| pilA | Glaesserella parasuis strain SC1401 |
54.362 |
100 |
0.544 |
| pilA2 | Legionella pneumophila str. Paris |
41.497 |
98.658 |
0.409 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.497 |
98.658 |
0.409 |
| pilA | Vibrio campbellii strain DS40M4 |
39.716 |
94.631 |
0.376 |