Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   DQL20_RS08105 Genome accession   NZ_LS483444
Coordinates   1547308..1547898 (-) Length   196 a.a.
NCBI ID   WP_006595825.1    Uniprot ID   A0A4Z1DUL7
Organism   Streptococcus australis strain NCTC13166     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1542308..1552898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL20_RS08080 (NCTC11371_01576) - 1542968..1543732 (-) 765 WP_006595830.1 ABC transporter ATP-binding protein -
  DQL20_RS08085 (NCTC11371_01577) - 1543732..1544679 (-) 948 WP_006595829.1 branched-chain amino acid ABC transporter permease -
  DQL20_RS08090 (NCTC11371_01578) - 1544683..1545552 (-) 870 WP_009731472.1 branched-chain amino acid ABC transporter permease -
  DQL20_RS08095 (NCTC11371_01579) - 1545634..1546791 (-) 1158 WP_006595827.1 ABC transporter substrate-binding protein -
  DQL20_RS08100 (NCTC11371_01580) - 1546886..1547170 (-) 285 WP_006595826.1 DUF2129 domain-containing protein -
  DQL20_RS08105 (NCTC11371_01581) clpP 1547308..1547898 (-) 591 WP_006595825.1 ATP-dependent Clp protease proteolytic subunit Regulator
  DQL20_RS08110 (NCTC11371_01582) upp 1548063..1548692 (-) 630 WP_006597185.1 uracil phosphoribosyltransferase -
  DQL20_RS08115 (NCTC11371_01583) mgtA 1548793..1551453 (-) 2661 WP_006595823.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21463.59 Da        Isoelectric Point: 5.0054

>NTDB_id=1141755 DQL20_RS08105 WP_006595825.1 1547308..1547898(-) (clpP) [Streptococcus australis strain NCTC13166]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYMYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAENSGQ
TLKKIHADAERDNWMTAEETLAYGFIDEIMSNNNLG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1141755 DQL20_RS08105 WP_006595825.1 1547308..1547898(-) (clpP) [Streptococcus australis strain NCTC13166]
ATGATTCCAGTAGTAATTGAACAAACTAGTCGTGGGGAACGCTCATACGACATTTATTCTCGCCTCTTAAAAGACCGGAT
TATCATGGTAACAGGACCAGTAGAAGATCAAATGGCCAATTCCATTATTGCCCAATTGCTTTTCTTGGATGCTCAAGATA
ATACCAAAGATATCTACATGTATGTTAATACACCGGGTGGGTCTGTTTCAGCAGGGCTGGCCATTGTAGATACCATGAAC
TTTATCAAATCAGATGTCCAAACCATTGTTATGGGAATGGCGGCTTCCATGGGGACTGTGATTGCGTCAAGTGGTGCTAA
AGGCAAACGCTTCATGTTGCCAAACGCGGAGTACATGATTCACCAACCAATGGGTGGAACTGGCGGTGGTACCCAACAAA
CAGATATGGCGATTGCAGCAGAACACCTCTTGAAAACACGTCACAGATTGGAAAAAATCTTGGCGGAAAATTCTGGGCAA
ACCCTCAAGAAAATCCACGCAGATGCGGAACGCGATAACTGGATGACTGCTGAAGAAACATTGGCCTATGGTTTTATCGA
TGAAATCATGTCCAATAACAATTTAGGCTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z1DUL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

91.795

99.49

0.913
  clpP Streptococcus pyogenes MGAS315

91.795

99.49

0.913
  clpP Streptococcus pneumoniae Rx1

91.282

99.49

0.908
  clpP Streptococcus pneumoniae D39

91.282

99.49

0.908
  clpP Streptococcus pneumoniae R6

91.282

99.49

0.908
  clpP Streptococcus pneumoniae TIGR4

91.282

99.49

0.908
  clpP Streptococcus thermophilus LMG 18311

89.744

99.49

0.893
  clpP Streptococcus thermophilus LMD-9

89.744

99.49

0.893
  clpP Streptococcus mutans UA159

87.692

99.49

0.872
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.128

99.49

0.847
  clpP Lactococcus lactis subsp. cremoris KW2

84.615

99.49

0.842
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

97.959

0.566
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.477

98.469

0.556

Multiple sequence alignment