Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   DQL20_RS03625 Genome accession   NZ_LS483444
Coordinates   659965..660642 (+) Length   225 a.a.
NCBI ID   WP_006596934.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC13166     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 654965..665642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL20_RS03605 (NCTC11371_00715) - 655520..655804 (-) 285 WP_006596926.1 GIY-YIG nuclease family protein -
  DQL20_RS03610 (NCTC11371_00716) - 655794..656540 (-) 747 WP_006596670.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DQL20_RS03615 (NCTC11371_00717) - 656640..658979 (-) 2340 WP_006596669.1 cation-translocating P-type ATPase -
  DQL20_RS03620 (NCTC11371_00718) - 659117..659860 (+) 744 WP_006596667.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  DQL20_RS03625 (NCTC11371_00719) comEA/celA/cilE 659965..660642 (+) 678 WP_006596934.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQL20_RS03630 (NCTC11371_00720) comEC/celB 660626..662866 (+) 2241 WP_006596665.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQL20_RS03635 (NCTC11371_00721) - 662929..663594 (+) 666 WP_006596664.1 DUF805 domain-containing protein -
  DQL20_RS03640 (NCTC11371_00722) holA 663572..664609 (+) 1038 WP_006596663.1 DNA polymerase III subunit delta -
  DQL20_RS03645 (NCTC11371_00723) sodA 664681..665286 (+) 606 WP_006596662.1 superoxide dismutase SodA -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24419.46 Da        Isoelectric Point: 4.5642

>NTDB_id=1141739 DQL20_RS03625 WP_006596934.1 659965..660642(+) (comEA/celA/cilE) [Streptococcus australis strain NCTC13166]
METWIEKIKEYKLFLGLAAVGLVIGGLFLFWPKQPPQAPETVISQLEMVDQETSPKEDTSLSSSSQQRSEEKMEPSQEKI
MVDVKGAVRQAGVYELPVGSRVYDAVQKAGGMTDEANSQSVNLAQKLEDESIVYVAKNGEEIAPVASASAGTTSGEQQSK
DGKVNLNTATEAELQTISGIGQKRAQDIIAYREGKGKFQSVDELKNVSGIGQKTLEKLKEHVTVD

Nucleotide


Download         Length: 678 bp        

>NTDB_id=1141739 DQL20_RS03625 WP_006596934.1 659965..660642(+) (comEA/celA/cilE) [Streptococcus australis strain NCTC13166]
ATGGAGACGTGGATTGAGAAGATCAAGGAATATAAACTATTTTTAGGCTTGGCTGCTGTGGGCTTGGTAATTGGAGGACT
ATTTCTCTTTTGGCCTAAGCAGCCCCCACAAGCACCGGAAACTGTCATTTCCCAGTTAGAAATGGTGGATCAGGAGACGT
CTCCTAAGGAAGACACAAGCCTCTCTTCCAGCTCTCAGCAGAGGAGTGAGGAAAAGATGGAGCCCTCTCAAGAGAAAATC
ATGGTGGATGTGAAGGGAGCTGTCAGACAAGCGGGGGTTTATGAGCTTCCAGTGGGGAGCCGGGTCTATGACGCAGTGCA
AAAAGCAGGAGGGATGACAGACGAAGCTAACAGCCAATCCGTCAACTTGGCGCAAAAATTGGAGGATGAGTCCATCGTCT
ATGTTGCTAAGAATGGAGAGGAGATAGCGCCTGTTGCATCCGCATCTGCTGGAACGACAAGTGGCGAACAGCAGTCAAAA
GATGGGAAAGTCAATCTCAATACGGCAACAGAAGCAGAACTACAGACGATTTCTGGGATAGGTCAAAAGCGAGCCCAGGA
TATCATTGCTTATCGAGAGGGGAAAGGAAAATTTCAATCTGTTGATGAATTGAAAAATGTTTCTGGGATTGGCCAAAAGA
CGCTAGAAAAGTTAAAAGAGCATGTTACAGTGGATTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(161-223)

SLBB domain (SLBB)

(81-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

53.744

100

0.542
  comEA/celA/cilE Streptococcus pneumoniae D39

52.212

100

0.524
  comEA/celA/cilE Streptococcus pneumoniae R6

52.212

100

0.524
  comEA/celA/cilE Streptococcus pneumoniae Rx1

52.212

100

0.524
  comEA/celA/cilE Streptococcus mitis SK321

50.222

100

0.502
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50.222

100

0.502
  comEA Streptococcus thermophilus LMD-9

46.491

100

0.471
  comEA Lactococcus lactis subsp. cremoris KW2

38.034

100

0.396

Multiple sequence alignment