Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQL20_RS02255 Genome accession   NZ_LS483444
Coordinates   398021..400006 (+) Length   661 a.a.
NCBI ID   WP_006594957.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC13166     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 393021..405006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL20_RS02240 (NCTC11371_00442) - 393810..394382 (+) 573 WP_006594960.1 hypothetical protein -
  DQL20_RS02245 (NCTC11371_00443) pbp3 394448..395689 (-) 1242 WP_006594959.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL20_RS02250 (NCTC11371_00444) amiA3 395865..397829 (+) 1965 WP_006594958.1 peptide ABC transporter substrate-binding protein Regulator
  DQL20_RS02255 (NCTC11371_00445) amiA3 398021..400006 (+) 1986 WP_006594957.1 peptide ABC transporter substrate-binding protein Regulator
  DQL20_RS02260 (NCTC11371_00446) amiC 400071..401570 (+) 1500 WP_006594956.1 ABC transporter permease Regulator
  DQL20_RS02265 (NCTC11371_00447) amiD 401570..402496 (+) 927 WP_006594955.1 oligopeptide ABC transporter permease OppC Regulator
  DQL20_RS02270 (NCTC11371_00448) amiE 402508..403575 (+) 1068 WP_006594954.1 ABC transporter ATP-binding protein Regulator
  DQL20_RS02275 (NCTC11371_00449) amiF 403585..404508 (+) 924 WP_006594953.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73118.17 Da        Isoelectric Point: 4.9189

>NTDB_id=1141724 DQL20_RS02255 WP_006594957.1 398021..400006(+) (amiA3) [Streptococcus australis strain NCTC13166]
MKKSKVFAFAGVTLLAATFLAACSGSKDSKSASKKDTTYGYVYNDDPTTLDYTVSSKASVHDITTNGVDGLLENDKYGNL
VPSIAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAHDFVTGLKHAADKKSESLPLVKDSIKGLKDYSEGKISDFS
EVGVKAVDDYTLEYTLNQPETFWNSKTTNGVLFPISTEFLKSKGDEFGQPGNVKSILFNGPFLLKSITSKSEITFEKNED
YWDKDNVHIDKIKLSYYDGSDQDSIARGFSDGSYTKARLYPASSNFASVEKKYKDNIYNTQPGSGVAVLGFNIDRQAYNH
TSKTSDEQKSSTKKAILNKDFRQAITFALNRENYSAQVNGKEYAKAAIRNMYTAPAFVQVNGKDFGDVVADKLQTYGDQW
SGVNLADGQNGLYSKEKAKAQFEKAKAELQKEGVQFPIHLDVPVAQNSTNFVSRMQSFKQSVEETLGTENVVVDLQMMDQ
DEVLNITLNVPSAAETDWDLQGLVGWNPDYDDPSTYLDTLQPSSPDQTKTYLGFAGGVDNASAKAVGLDEYAKLLDDAEK
ETLDVVTRYEKFAAAQAWLTDSALVIPTMTSSGAATVVSKVVPFSEPSSQTGNKGSTYFKYVEVQDEPVTKKQYDQAREK
WLKEKAESNKKAQQELEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=1141724 DQL20_RS02255 WP_006594957.1 398021..400006(+) (amiA3) [Streptococcus australis strain NCTC13166]
ATGAAAAAAAGTAAAGTTTTTGCATTTGCCGGAGTAACATTGCTCGCAGCAACTTTCCTTGCAGCATGTTCTGGCTCAAA
AGATAGCAAGTCTGCATCAAAAAAAGATACAACTTATGGCTATGTTTATAACGATGATCCAACAACTTTGGATTACACTG
TATCTTCAAAAGCGTCTGTGCACGATATTACAACTAACGGTGTAGATGGTTTGTTGGAAAACGACAAATACGGAAATCTT
GTGCCATCTATTGCTGAAGATTGGTCTGTTTCAAAAGACGGTTTGACTTATACTTACAAAATCCGTAAGGGTGTTAAATG
GTATGATGCCGATGGCGAAGAGCATGGTGAAGTAACAGCTCATGACTTTGTTACTGGATTGAAGCATGCGGCAGACAAGA
AATCAGAATCTCTTCCATTGGTGAAAGACTCAATCAAAGGATTGAAAGACTACTCAGAAGGAAAAATTTCAGACTTCTCT
GAAGTTGGGGTCAAAGCAGTAGATGATTATACACTTGAGTATACTTTGAACCAACCAGAAACTTTCTGGAATTCAAAAAC
AACTAATGGGGTTCTTTTCCCAATTAGTACAGAATTCTTGAAGAGCAAGGGTGATGAATTTGGTCAGCCAGGTAATGTCA
AATCAATCTTGTTCAATGGTCCATTCCTTTTGAAATCAATCACTTCTAAATCAGAAATCACTTTTGAGAAGAACGAAGAT
TACTGGGATAAAGACAACGTTCATATTGACAAGATTAAATTGTCTTATTATGATGGATCAGATCAAGATTCCATAGCGCG
CGGTTTTAGCGATGGTTCATATACCAAGGCGCGTCTATACCCTGCTAGCTCTAACTTTGCGTCTGTTGAAAAGAAATACA
AAGACAATATCTACAACACACAGCCTGGTTCTGGTGTCGCAGTCTTAGGTTTCAACATTGACCGTCAAGCCTACAACCAT
ACTTCTAAAACATCAGATGAGCAGAAATCTTCCACGAAGAAAGCGATCTTGAACAAGGATTTCCGTCAAGCCATCACCTT
TGCCTTGAACCGCGAAAATTATTCAGCACAAGTTAATGGTAAAGAATACGCTAAGGCTGCTATTCGAAATATGTACACTG
CACCTGCCTTTGTTCAAGTAAATGGTAAAGACTTTGGTGATGTAGTAGCAGACAAGTTGCAAACTTATGGAGATCAATGG
AGCGGTGTGAATCTTGCAGACGGTCAAAACGGACTCTATAGCAAGGAAAAAGCAAAAGCTCAGTTTGAAAAAGCAAAAGC
TGAACTCCAAAAAGAGGGTGTTCAATTCCCAATCCACTTGGATGTTCCGGTTGCACAAAACTCAACAAACTTTGTGTCAC
GGATGCAATCCTTCAAACAATCAGTTGAAGAAACACTTGGCACAGAAAACGTTGTGGTGGACCTTCAAATGATGGACCAA
GATGAAGTGTTAAACATTACTCTTAACGTACCATCAGCTGCAGAAACTGACTGGGATCTTCAAGGACTTGTAGGATGGAA
TCCAGACTATGATGACCCATCTACTTACCTTGATACCTTGCAACCATCTTCTCCAGACCAAACTAAGACTTACCTTGGAT
TTGCTGGTGGTGTCGACAATGCTTCTGCTAAAGCAGTTGGTTTAGATGAATATGCGAAGTTGCTTGATGATGCAGAAAAA
GAAACCCTAGACGTAGTGACACGTTATGAAAAATTTGCAGCAGCGCAAGCTTGGTTAACAGATAGCGCATTAGTCATTCC
AACTATGACAAGCTCTGGTGCAGCTACAGTGGTTTCAAAAGTGGTTCCATTCTCTGAACCTTCCTCACAAACAGGTAACA
AAGGATCAACTTATTTCAAATATGTTGAAGTTCAAGATGAACCGGTTACTAAAAAACAATATGATCAAGCACGTGAAAAA
TGGTTGAAAGAAAAAGCTGAATCAAACAAGAAAGCTCAGCAAGAACTAGAAAAACACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.125

100

0.593
  amiA3 Streptococcus thermophilus LMG 18311

58.673

100

0.589
  amiA Streptococcus salivarius strain HSISS4

58.761

100

0.588

Multiple sequence alignment