Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DQL20_RS02270 Genome accession   NZ_LS483444
Coordinates   402508..403575 (+) Length   355 a.a.
NCBI ID   WP_006594954.1    Uniprot ID   E7S7G7
Organism   Streptococcus australis strain NCTC13166     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 397508..408575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL20_RS02255 (NCTC11371_00445) amiA3 398021..400006 (+) 1986 WP_006594957.1 peptide ABC transporter substrate-binding protein Regulator
  DQL20_RS02260 (NCTC11371_00446) amiC 400071..401570 (+) 1500 WP_006594956.1 ABC transporter permease Regulator
  DQL20_RS02265 (NCTC11371_00447) amiD 401570..402496 (+) 927 WP_006594955.1 oligopeptide ABC transporter permease OppC Regulator
  DQL20_RS02270 (NCTC11371_00448) amiE 402508..403575 (+) 1068 WP_006594954.1 ABC transporter ATP-binding protein Regulator
  DQL20_RS02275 (NCTC11371_00449) amiF 403585..404508 (+) 924 WP_006594953.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39696.33 Da        Isoelectric Point: 4.7446

>NTDB_id=1141727 DQL20_RS02270 WP_006594954.1 402508..403575(+) (amiE) [Streptococcus australis strain NCTC13166]
MTTDKNVILSARDIVVEFDVRDRVLTAIRNVSLDLVEGEVMALVGESGSGKSVLTKTFTGMLEDNGRIANGTINYRGQEL
TELKSNKDWEDIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAREMAIDYMEKVGIPEAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYNFTTIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPRHPYTWSLLSSLPQLSTSKGDLYSIPGTPPSLYSPVKGDAFALRSDYAMQIDFEEHPPVFNVSNTHWAK
TWLLHEDAPKVNKPEIIDNLHEKISAKMGFTTMKD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1141727 DQL20_RS02270 WP_006594954.1 402508..403575(+) (amiE) [Streptococcus australis strain NCTC13166]
ATGACAACTGATAAAAATGTAATCTTATCTGCTCGCGATATCGTAGTAGAATTTGATGTTCGGGATCGTGTCTTAACAGC
TATTCGCAATGTGTCTTTAGACCTTGTTGAAGGTGAAGTCATGGCACTTGTTGGTGAATCAGGTTCTGGTAAATCTGTTT
TGACAAAAACCTTCACAGGAATGTTAGAAGACAACGGACGAATTGCCAATGGTACTATTAATTATCGCGGACAAGAATTA
ACAGAACTCAAGTCAAATAAAGATTGGGAAGATATCCGCGGTGCAAAAATTGCAACAATCTTCCAAGATCCGATGACCAG
TTTGGACCCGATTAATACAATTGGATCACAAATTACGGAAGTTATTATTAAACACCAAGGTAAGAGTGCCAAAGAAGCCA
GAGAGATGGCCATTGATTATATGGAAAAGGTTGGAATCCCAGAAGCAGAACGTCGCTTTGATGAATATCCTTTCCAATAT
TCAGGTGGAATGCGCCAACGGATTGTTATTGCTATTGCGCTTGCTTGTCGTCCTGATATCTTAATCTGTGACGAGCCTAC
AACTGCCCTTGACGTAACCATCCAAGCCCAAATCATCGACTTATTGAAATCATTGCAAAAAGAATATAACTTTACAACAA
TCTTTATTACCCATGACTTAGGTGTGGTCGCAAGTATCGCAGATAAGGTTGCTGTAATGTATGCTGGTGAAATTGTCGAA
TTTGGTAAAGTAGAAGAAATCTTCTATGACCCAAGACATCCTTATACATGGAGTCTTCTTTCAAGTTTGCCACAGTTATC
TACCTCAAAAGGTGATTTATATTCTATCCCAGGGACTCCTCCATCATTGTATTCACCAGTAAAAGGTGATGCCTTTGCTT
TGCGCTCTGACTATGCCATGCAAATTGATTTCGAGGAACACCCACCAGTCTTCAATGTTTCCAATACACATTGGGCTAAA
ACGTGGCTCTTGCATGAAGATGCACCAAAAGTCAATAAACCAGAAATTATTGATAATCTTCATGAAAAGATTAGTGCGAA
AATGGGATTCACTACAATGAAGGACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E7S7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

83.662

100

0.837
  amiE Streptococcus thermophilus LMG 18311

81.972

100

0.82
  amiE Streptococcus thermophilus LMD-9

81.972

100

0.82
  oppD Streptococcus mutans UA159

55.942

97.183

0.544

Multiple sequence alignment