Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQL20_RS02265 Genome accession   NZ_LS483444
Coordinates   401570..402496 (+) Length   308 a.a.
NCBI ID   WP_006594955.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC13166     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 396570..407496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL20_RS02255 (NCTC11371_00445) amiA3 398021..400006 (+) 1986 WP_006594957.1 peptide ABC transporter substrate-binding protein Regulator
  DQL20_RS02260 (NCTC11371_00446) amiC 400071..401570 (+) 1500 WP_006594956.1 ABC transporter permease Regulator
  DQL20_RS02265 (NCTC11371_00447) amiD 401570..402496 (+) 927 WP_006594955.1 oligopeptide ABC transporter permease OppC Regulator
  DQL20_RS02270 (NCTC11371_00448) amiE 402508..403575 (+) 1068 WP_006594954.1 ABC transporter ATP-binding protein Regulator
  DQL20_RS02275 (NCTC11371_00449) amiF 403585..404508 (+) 924 WP_006594953.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34504.41 Da        Isoelectric Point: 9.7758

>NTDB_id=1141726 DQL20_RS02265 WP_006594955.1 401570..402496(+) (amiD) [Streptococcus australis strain NCTC13166]
MSTIDKKKFQFVERDDFASETIDAPSYSYWKSVFRQFFKKKSTILMLAVLVGILLMSFVYPMFSNFDYNDVSKVNDFTAR
LNPPSAKAFFGTDNNGKSLFDGVWFGARNSIIISFIATLINVVIGVVIGGIWGVSKSIDRFMMEVYNVISNVPFMLIVIV
LTYSIGAGFWNLILAMTVTGWIGIAYSIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNILPQLVSVIVTTTTQLLPAFIS
TEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLVLVSLSFYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1141726 DQL20_RS02265 WP_006594955.1 401570..402496(+) (amiD) [Streptococcus australis strain NCTC13166]
ATGTCTACAATCGATAAAAAGAAATTCCAATTTGTTGAACGTGACGATTTTGCCTCTGAAACAATTGATGCGCCGTCGTA
CTCATACTGGAAATCAGTATTCCGTCAATTCTTCAAAAAGAAATCAACCATTTTGATGTTAGCCGTTTTGGTTGGTATTC
TCTTGATGAGTTTTGTATACCCGATGTTTTCAAACTTTGATTATAATGATGTAAGTAAAGTAAATGACTTCACTGCTCGT
TTGAATCCTCCAAGTGCCAAGGCCTTCTTCGGTACGGATAACAATGGTAAATCCTTGTTTGATGGAGTTTGGTTTGGTGC
CCGCAATTCGATTATCATCTCCTTTATTGCTACCTTGATCAATGTTGTGATTGGTGTTGTGATTGGTGGGATTTGGGGTG
TATCAAAATCAATCGACCGCTTCATGATGGAAGTTTACAACGTTATTTCAAACGTTCCATTCATGTTAATTGTTATTGTC
TTGACTTACTCAATCGGTGCTGGTTTCTGGAACTTGATTTTGGCGATGACGGTAACAGGATGGATTGGGATTGCTTATTC
TATCCGTGTTCAAATTATGCGTTACCGTGATTTAGAGTACAACTTGGCCAGCCGTACTTTGGGTACTCCAACTCTAAAAA
TCGTGACAAAAAATATCTTGCCACAGTTGGTATCTGTCATTGTGACGACAACTACACAGTTGTTGCCAGCCTTCATTTCA
ACTGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCAATTACAGTTCCAAGTTTAGGTCGTCTGATTTCAGATTACTC
ACAAAACGTAACAACCAATGCATATCTTTTCTGGATTCCATTGACAGTCTTAGTCTTGGTATCCTTGTCATTCTATATCG
TTGGACAAAACCTTGCAGATGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

77.597

100

0.776
  amiD Streptococcus thermophilus LMG 18311

76.623

100

0.766
  amiD Streptococcus thermophilus LMD-9

76.623

100

0.766

Multiple sequence alignment